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updated build targets to include bam_calnh.c
author
Henry Amrhein
<hamrhein@caltech.edu>
Fri, 21 Dec 2012 20:35:38 +0000
(12:35 -0800)
committer
Henry Amrhein
<hamrhein@caltech.edu>
Fri, 21 Dec 2012 20:35:38 +0000
(12:35 -0800)
Makefile
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diff --git
a/Makefile
b/Makefile
index db183330d1fb76ce4fa0d17d8dab65afdfbeb65a..7569e27131c81a6c56d713d9a4e79951e63b6c25 100644
(file)
--- a/
Makefile
+++ b/
Makefile
@@
-8,7
+8,7
@@
LOBJS= bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o \
AOBJS= bam_tview.o bam_plcmd.o sam_view.o \
bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o \
bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o \
AOBJS= bam_tview.o bam_plcmd.o sam_view.o \
bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o \
bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o \
- cut_target.o phase.o bam2depth.o
+ cut_target.o phase.o bam2depth.o
bam_calnh.o
PROG= samtools
INCLUDES= -I.
SUBDIRS= . bcftools misc
PROG= samtools
INCLUDES= -I.
SUBDIRS= . bcftools misc
@@
-49,6
+49,10
@@
razip:razip.o razf.o $(KNETFILE_O)
bgzip:bgzip.o bgzf.o $(KNETFILE_O)
$(CC) $(CFLAGS) -o $@ bgzf.o bgzip.o $(KNETFILE_O) -lz
bgzip:bgzip.o bgzf.o $(KNETFILE_O)
$(CC) $(CFLAGS) -o $@ bgzf.o bgzip.o $(KNETFILE_O) -lz
+bam_calnh:lib-recur $(AOBJS)
+ rm -fr bam_calnh.o; \
+ $(CC) $(CFLAGS) -D_STANDALONE -o $@ bam_calnh.c -lbam -lm
+
razip.o:razf.h
bam.o:bam.h razf.h bam_endian.h kstring.h sam_header.h
sam.o:sam.h bam.h
razip.o:razf.h
bam.o:bam.h razf.h bam_endian.h kstring.h sam_header.h
sam.o:sam.h bam.h