placed in ‘/usr/share/samtools’ and ‘/usr/lib/samtools’ for Perl scripts and
binary executables respectively.
-Currently, the BAM library only exists in static version.
+Currently, the BAM library only exists in static version. It (actually the
+whole package) is built with the -fPIC option, to allow the compilation of the
+Bio::SamTools Perl module on the amd64 platform (Debian package
+libbio-samtools-perl).
- -- Charles Plessy <plessy@debian.org> Sat, 08 Aug 2009 11:50:09 +0900
+ -- Charles Plessy <plessy@debian.org> Thu, 03 Sep 2009 19:24:02 +0900
+samtools (0.1.5c-2) unstable; urgency=low
+
+ * Rebuilt with -fPIC (debian/rules, README.Debian).
+ * Small corrections to the description from upstream (debian/changelog).
+ * Incremented Standards-Version to reflect conformance with Policy 3.8.3
+ (no changes needed).
+
+ -- Charles Plessy <plessy@debian.org> Thu, 03 Sep 2009 19:29:40 +0900
+
samtools (0.1.5c-1) unstable; urgency=low
* Initial release (Closes: #540453)
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <plessy@debian.org>
Build-Depends: debhelper (>= 7), cdbs, libncurses5-dev, zlib1g-dev
-Standards-Version: 3.8.2
+Standards-Version: 3.8.3
Homepage: http://samtools.sourceforge.net
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/samtools/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/samtools/trunk/
Depends: ${shlibs:Depends}, ${misc:Depends}
Description: processing sequence alignments in SAM and BAM formats
Samtools is a set of utilities that manipulate nucleotide sequence alignments
- in the BAM format. It imports from and exports to the SAM (Sequence
- Alignment/Map) format, does sorting, merging and indexing, and allows to
- retrieve reads in any regions swiftly. It is designed to work on a stream, and
- is able to open a BAM (not SAM) file on a remote FTP server.
+ in the binary BAM format. It imports from and exports to the ascii SAM
+ (Sequence Alignment/Map) format, does sorting, merging and indexing, and allows
+ to retrieve reads in any regions swiftly. It is designed to work on a stream,
+ and is able to open a BAM (not SAM) file on a remote FTP server.
Package: libbam-dev
Architecture: any
Description: manipulates nucleotide sequence alignments in BAM or SAM format
The BAM library provides I/O and various operations on manipulating nucleotide
sequence alignments in the BAM (Binary Alignment/Mapping) or SAM (Sequence
- Alignment/Map) format. It now supports importing from or exporting to TAM,
+ Alignment/Map) format. It now supports importing from or exporting to SAM,
sorting, merging, generating pileup, and quickly retrieval of reads overlapped
with a specified region.