1 Release 0.2.4 (10 April, 2011)
2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
6 * Give an error if the index file is older than the data file.
8 * Avoid a segfault given flawed input.
10 * Added Python APIs contributed by Hyeshik Chang. The new APIs do not bind to
11 the dynamic library and are reported to be faster. Pysam also comes with a
14 * Added option "-r" for efficient header replacement.
18 * Synchronized the BGZF library between tabix and samtools.
20 (0.2.4: 10 April 2011, r949)
24 Beta Release 0.2.3 (8 December, 2010)
25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
29 * Fixed a minor bug where the first record in a headerless file may be
32 * Added an option to print header lines.
34 * Fixed a rare bug which may occasionally happen when retrieving data
35 from a region without any records.
37 * Enhanced error reporting.
39 * Fixed a bug in bgzip which may delete the original file even if not
42 (0.2.3: 8 December 2010, r876)
46 Beta Release 0.2.2 (28 June, 2010)
47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
51 * Dropped the VCF3 support. Added VCF4 support.
53 * Avoided the function name collision with samtools.
55 (0.2.2: 28 June 2010, r603)
59 Beta Release 0.2.1 (3 June, 2010)
60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
64 * Allow shared library to be compiled. Added python binding to the
67 (0.2.1: 3 June 2010, r582)
71 Beta Release 0.2.0 (11 May, 2010)
72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
76 * Fixed an issue for random access given an interval end larger than
79 * Updated the Java binding.
81 * Added a Perl module using XS.
83 * Improved the C APIs.
85 (0.2.0: 11 May 2010, r574)
89 Beta Release 0.1.6 (9 May, 2010)
90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
94 * Improved backward compatibility. Release 0.1.5 does not work with the
95 buggy index file generated by 0.1.2.
97 * Fixed a bug in building linear index. The bug does not affect the
98 results, only affects efficiency in rare cases.
100 * Reduced the number of seek calls given an index generated by old
103 * Added new APIs for retrieving data via an iterator. The old callback
104 APIs are not changed, although internally it uses iterator to
107 I am trying to freeze tabix. I just hope I am committing new bugs.
109 (0.1.6: 9 May 2010, r563)
113 Beta Release 0.1.5 (5 May, 2010)
114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
118 * Clarified that tabix is released under MIT/X11.
120 * Improved the robustness of indexing and retrieval.
122 * Reduced the number of seek calls when the specified region starts
123 from a 16kb block with no data. The index format is the same, but the
124 content is changed a little.
126 (0.1.5: 5 May 2010, r560)