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Changelog entry marking the package released.
[tabix.git]
/
Makefile
diff --git
a/Makefile
b/Makefile
index 3d7153d4a58bcfb8508eaef041f7f50d22e3191c..9c8e9174c443990353ed1576c5d8cdc5ab399069 100644
(file)
--- a/
Makefile
+++ b/
Makefile
@@
-1,7
+1,7
@@
CC= gcc
CC= gcc
-CFLAGS= -g -Wall -O2 #-m64 #-arch ppc
-DFLAGS= -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE
-LOBJS= bgzf.o kstring.o knetfile.o index.o
+CFLAGS= -g -Wall -O2
-fPIC
#-m64 #-arch ppc
+DFLAGS= -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE
-DBGZF_CACHE
+LOBJS= bgzf.o kstring.o knetfile.o index.o
bedidx.o
AOBJS= main.o
PROG= tabix bgzip
INCLUDES=
AOBJS= main.o
PROG= tabix bgzip
INCLUDES=
@@
-28,23
+28,36
@@
all:$(PROG)
lib:libtabix.a
lib:libtabix.a
+libtabix.so.1:$(LOBJS)
+ $(CC) -shared -Wl,-soname,libtabix.so -o $@ $(LOBJS) -lc -lz
+
+libtabix.1.dylib:$(LOBJS)
+ libtool -dynamic $(LOBJS) -o $@ -lc -lz
+
libtabix.a:$(LOBJS)
libtabix.a:$(LOBJS)
- $(AR) -cru $@ $(LOBJS)
+ $(AR) -c
s
ru $@ $(LOBJS)
tabix:lib $(AOBJS)
tabix:lib $(AOBJS)
- $(CC) $(CFLAGS) -o $@ $(AOBJS) -
lm $(LIBPATH) -lz -L. -ltabix
+ $(CC) $(CFLAGS) -o $@ $(AOBJS) -
L. -ltabix -lm $(LIBPATH) -lz
bgzip:bgzip.o bgzf.o knetfile.o
$(CC) $(CFLAGS) -o $@ bgzip.o bgzf.o knetfile.o -lz
bgzip:bgzip.o bgzf.o knetfile.o
$(CC) $(CFLAGS) -o $@ bgzip.o bgzf.o knetfile.o -lz
+TabixReader.class:TabixReader.java
+ javac -cp .:sam.jar TabixReader.java
+
kstring.o:kstring.h
knetfile.o:knetfile.h
bgzf.o:bgzf.h knetfile.h
index.o:bgzf.h tabix.h khash.h ksort.h kstring.h
main.o:tabix.h kstring.h bgzf.h
bgzip.o:bgzf.h
kstring.o:kstring.h
knetfile.o:knetfile.h
bgzf.o:bgzf.h knetfile.h
index.o:bgzf.h tabix.h khash.h ksort.h kstring.h
main.o:tabix.h kstring.h bgzf.h
bgzip.o:bgzf.h
+bedidx.o:kseq.h khash.h
+
+tabix.pdf:tabix.tex
+ pdflatex tabix.tex
cleanlocal:
cleanlocal:
- rm -fr gmon.out *.o a.out *.dSYM $(PROG) *~ *.a
+ rm -fr gmon.out *.o a.out *.dSYM $(PROG) *~ *.a
tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
clean:cleanlocal-recur
clean:cleanlocal-recur