Imported Upstream version 0.2.3

[tabix.git] / bgzip.c

diff --git a/bgzip.c b/bgzip.c
index d144632c64a1f7b8f7ce2d060c49a680e50f7915..ebcafa20651fd2b3a9863bfe38dc590497099671 100644 (file)
--- a/bgzip.c
+++ b/bgzip.c
@@ -138,7 +138,7 @@ int main(int argc, char **argv)
                        if (bgzf_write(fp, buffer, c) < 0) fail(fp);
                // f_dst will be closed here
                if (bgzf_close(fp) < 0) fail(fp);
-               if (argc > optind) unlink(argv[optind]);
+               if (argc > optind && !pstdout) unlink(argv[optind]);
                free(buffer);
                close(f_src);
                return 0;
@@ -166,10 +166,15 @@ int main(int argc, char **argv)
                                return 1;
                        }
 
-                       name = strdup(argv[optind]);
-                       name[strlen(name) - 3] = '\0';
-                       f_dst = write_open(name, is_forced);
-                       free(name);
+                       if (pstdout) {
+                               f_dst = fileno(stdout);
+                       }
+                       else {
+                               name = strdup(argv[optind]);
+                               name[strlen(name) - 3] = '\0';
+                               f_dst = write_open(name, is_forced);
+                               free(name);
+                       }
                }
                else if (!pstdout && isatty(fileno((FILE *)stdin)) )
                        return bgzip_main_usage();