Imported Upstream version 0.2.4

[tabix.git] / python / setup.py

diff --git a/python/setup.py b/python/setup.py
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+#!/usr/bin/env python
+#
+# The MIT License
+#
+# Copyright (c) 2011 Seoul National University.
+#
+# Permission is hereby granted, free of charge, to any person obtaining
+# a copy of this software and associated documentation files (the
+# "Software"), to deal in the Software without restriction, including
+# without limitation the rights to use, copy, modify, merge, publish,
+# distribute, sublicense, and/or sell copies of the Software, and to
+# permit persons to whom the Software is furnished to do so, subject to
+# the following conditions:
+#
+# The above copyright notice and this permission notice shall be
+# included in all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+# MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
+# BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
+# ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
+# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+# SOFTWARE.
+#
+# Contact: Hyeshik Chang <hyeshik@snu.ac.kr>
+
+from distutils.core import setup, Extension
+
+# Change this to True when you need the knetfile support.
+USE_KNETFILE = False
+
+TABIX_SOURCE_FILES = [
+    '../bgzf.c', '../bgzip.c', '../index.c', '../knetfile.c', '../kstring.c'
+]
+
+define_options = [('_FILE_OFFSET_BITS', 64)]
+if USE_KNETFILE:
+    define_options.append(('_USE_KNETFILE', 1))
+
+ext_modules = [Extension("tabix", ["tabixmodule.c"] + TABIX_SOURCE_FILES,
+                         include_dirs=['..'],
+                         libraries=['z'],
+                         define_macros=define_options)]
+
+setup (name = 'tabix',
+       version = '1.0',
+       description = 'Python interface to tabix, a generic indexer '
+                     'for TAB-delimited genome position files',
+       author = 'Hyeshik Chang',
+       author_email = 'hyeshik@snu.ac.kr',
+       license = 'MIT',
+       ext_modules = ext_modules
+)