--- /dev/null
+Index: tabix/Makefile
+===================================================================
+--- tabix.orig/Makefile 2012-12-21 16:05:38.710131804 -0800
++++ tabix/Makefile 2012-12-21 16:08:18.234126173 -0800
+@@ -1,47 +1,47 @@
+-CC= gcc
+-CFLAGS= -g -Wall -O2 -fPIC #-m64 #-arch ppc
++CC= gcc
++CFLAGS= -g -Wall -O2
+ DFLAGS= -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE
+-LOBJS= bgzf.o kstring.o knetfile.o index.o bedidx.o
+-AOBJS= main.o
++LOBJS= bgzf.lo kstring.lo knetfile.lo index.lo bedidx.lo
++AOBJS= main.lo
++BOBJS= bgzip.lo bgzf.lo
+ PROG= tabix bgzip
+ INCLUDES=
+ SUBDIRS= .
+ LIBPATH=
+-LIBCURSES=
++LIBCURSES=
++LIBNAME= libtabix.la
++LIBVERSION= 1
++
++# catch platform settings
++UNAME := $(shell uname)
++ifeq ($(UNAME), Darwin)
++LIBTOOL := glibtool
++else
++LIBTOOL := libtool
++endif
++LTFLAGS= --tag=CC
++
++ifdef SHARED
++CFLAGS+= -shared
++else
++CFLAGS+= -static
++endif
++
++.SUFFIXES:.c .o .lo
++
++.c.lo:
++ $(LIBTOOL) $(LTFLAGS) --mode=compile $(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $<
++
++all:$(PROG) $(LIBNAME)
+
+-.SUFFIXES:.c .o
++$(LIBNAME):$(LOBJS)
++ $(LIBTOOL) $(LTFLAGS) --mode=link $(CC) $(CFLAGS) -version-info $(LIBVERSION) -rpath /usr/lib $(LOBJS) -o $@ -lc -lz
+
+-.c.o:
+- $(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@
++tabix:$(AOBJS) $(LIBNAME)
++ $(LIBTOOL) $(LTFLAGS) --mode=link $(CC) $(CFLAGS) -o $@ $(AOBJS) $(LIBNAME) -lm -lz
+
+-all-recur lib-recur clean-recur cleanlocal-recur install-recur:
+- @target=`echo $@ | sed s/-recur//`; \
+- wdir=`pwd`; \
+- list='$(SUBDIRS)'; for subdir in $$list; do \
+- cd $$subdir; \
+- $(MAKE) CC="$(CC)" DFLAGS="$(DFLAGS)" CFLAGS="$(CFLAGS)" \
+- INCLUDES="$(INCLUDES)" LIBPATH="$(LIBPATH)" $$target || exit 1; \
+- cd $$wdir; \
+- done;
+-
+-all:$(PROG)
+-
+-lib:libtabix.a
+-
+-libtabix.so.1:$(LOBJS)
+- $(CC) -shared -Wl,-soname,libtabix.so -o $@ $(LOBJS) -lc -lz
+-
+-libtabix.1.dylib:$(LOBJS)
+- libtool -dynamic $(LOBJS) -o $@ -lc -lz
+-
+-libtabix.a:$(LOBJS)
+- $(AR) -csru $@ $(LOBJS)
+-
+-tabix:lib $(AOBJS)
+- $(CC) $(CFLAGS) -o $@ $(AOBJS) -L. -ltabix -lm $(LIBPATH) -lz
+-
+-bgzip:bgzip.o bgzf.o knetfile.o
+- $(CC) $(CFLAGS) -o $@ bgzip.o bgzf.o knetfile.o -lz
++bgzip:$(BOBJS)
++ $(LIBTOOL) $(LTFLAGS) --mode=link $(CC) $(CFLAGS) -o $@ $(BOBJS) $(LIBNAME) -lz
+
+ TabixReader.class:TabixReader.java
+ javac -cp .:sam.jar TabixReader.java
+@@ -57,7 +57,5 @@
+ tabix.pdf:tabix.tex
+ pdflatex tabix.tex
+
+-cleanlocal:
+- rm -fr gmon.out *.o a.out *.dSYM $(PROG) *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
+-
+-clean:cleanlocal-recur
++clean:
++ $(LIBTOOL) --mode=clean rm -fr gmon.out $(LOBJS) $(AOBJS) $(BOBJS) a.out *.dSYM $(PROG) *~ tabix.aux tabix.log tabix.pdf *.class libtabix.la