# Clean
rm $TABIXDATA.gz $TABIXDATA.gz.tbi $TABIXDATA.out $TABIXDATA.ref
- -- Charles Plessy <plessy@debian.org> Tue, 10 May 2011 19:12:19 +0900
+This sequence of tests is also implemented debian/tests/with-example-data
+in the source package.
+
+ -- Charles Plessy <plessy@debian.org> Fri, 22 Jun 2012 13:11:36 +0900
Homepage: http://samtools.sourceforge.net/tabix.shtml
Vcs-Git: git://git.debian.org/debian-med/tabix.git
Vcs-Browser: http://git.debian.org/?p=debian-med/tabix.git
+XS-Testsuite: autopkgtest
Package: tabix
Architecture: any
--- /dev/null
+#!/bin/sh -e
+
+# Create a temporary file
+TABIXDATA=$(mktemp)
+
+# Uncompress example data
+zcat /usr/share/doc/tabix/examples/example.gtf.gz > $TABIXDATA
+
+# Compress example data with bgzip
+bgzip $TABIXDATA
+
+# Index with tabix
+tabix $TABIXDATA.gz
+
+# Extract with tabix the he features on chromosome 1 whose coordinates overlap
+# the interval 150,309–150,309.
+tabix $TABIXDATA.gz chr1:150309-150309 > $TABIXDATA.out
+
+# Reference result at the bottom of this file
+grep H\AVANA /usr/share/doc/tabix/README.test > $TABIXDATA.ref
+
+# No difference ?
+diff $TABIXDATA.ref $TABIXDATA.out
+
+# Clean
+rm $TABIXDATA.gz $TABIXDATA.gz.tbi $TABIXDATA.out $TABIXDATA.ref