| 2015-02-02 |
Diane Trout | base64.encodestring needs a bytearray in python3
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commit | commitdiff | tree |
| 2015-02-02 |
Diane Trout | Replace elif list() > int() with else
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commit | commitdiff | tree |
| 2015-01-30 |
Diane Trout | properly call usrlib.parse instead of urlparse
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commit | commitdiff | tree |
| 2015-01-30 |
Diane Trout | Convert alphanum sort from comparitor to key operator
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | convert from failUnlessEqual to assertEqual
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | update srf2fastq detection code to work with byte arrays
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | assume we are writing text with gzip
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | replace iterkeys with python 3 equivalents
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | convert has_key to X in dictionary
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | use six.moves to work around urllib / urllib2 / urlparse...
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | remove unicode_literals from things going to redland RDF
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | remove some commented out code
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | convert some print statements to logger messages
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | convert to print_function, and start adding unicode_literals...
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | put #!/usr/bin/env python in the right place
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | remove ,'s from more except blocks, and now a raise too
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | more use six.moves to import StringIO
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | use six.moves to get to python3-style urllib
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | whitespace-cleanup
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | remove some commented out code
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | convert to print_function
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | use force_text instead of force_unicode for python2...
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | import StringIO from six.moves
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | use six to work around rename of configparser
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | Convert old style except blocks to except Exception...
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commit | commitdiff | tree |
| 2015-01-28 |
Diane Trout | make the search tool more flexible
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commit | commitdiff | tree |
| 2015-01-26 |
Diane Trout | remove unused code
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commit | commitdiff | tree |
| 2015-01-21 |
Diane Trout | Update test_retrieve_config to work with factories
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commit | commitdiff | tree |
| 2015-01-14 |
Diane Trout | fix spelling error in module name
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commit | commitdiff | tree |
| 2015-01-13 |
Diane Trout | Don't pass null authentication information to ENCODED.
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commit | commitdiff | tree |
| 2015-01-13 |
Diane Trout | use absolute_import and print_function
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commit | commitdiff | tree |
| 2015-01-13 |
Diane Trout | Update inventory tests to use factory boy.
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commit | commitdiff | tree |
| 2015-01-12 |
Diane Trout | move the file type test cases out into their own module
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commit | commitdiff | tree |
| 2015-01-12 |
Diane Trout | use migrations for experiments, and use migrations...
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | get_schema_url only works on object types now, so change...
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | at some point I added code that used base64, hashlib...
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | Forgot to disable loading ClusterStation and Sequencer...
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | Convert experiments modules to use factories instead...
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | Improve samples_factory generated objects.
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | unimportant whitespace changes, at least the lines...
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | whitespace changes
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | fix typo -- or at least make it consistent. antigen...
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | move cluster station and sequencer tests out into their...
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | Use logger instead of trying to print to stdout. especially...
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commit | commitdiff | tree |
| 2015-01-09 |
Diane Trout | one should only return json objects. so put our arrays...
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commit | commitdiff | tree |
| 2014-12-13 |
Diane Trout | Merge branch 'django1.7' of mus.cacr.caltech.edu:htsworkflow...
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commit | commitdiff | tree |
| 2014-12-13 |
Diane Trout | Add document registration class.
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commit | commitdiff | tree |
| 2014-12-13 |
Diane Trout | add more type checking for parsing object type from...
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commit | commitdiff | tree |
| 2014-12-13 |
Diane Trout | add some helpful log messages
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commit | commitdiff | tree |
| 2014-12-01 |
Diane Trout | add ability to adjust some log level messages
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commit | commitdiff | tree |
| 2014-12-01 |
Diane Trout | commit script to copy jumpgate sqlite database to felcat...
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commit | commitdiff | tree |
| 2014-12-01 |
Diane Trout | require django 1.7 and factory boy for newer test code
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commit | commitdiff | tree |
| 2014-11-07 |
Diane Trout | Add some code to help read metadata out of spreadsheets.
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commit | commitdiff | tree |
| 2014-11-03 |
Diane Trout | forgot to change one test to use factory
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commit | commitdiff | tree |
| 2014-11-01 |
Diane Trout | The makemigrations code didn't like how I was setting...
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commit | commitdiff | tree |
| 2014-11-01 |
Diane Trout | name get_query_set was deprecated in favor of get_queryset
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commit | commitdiff | tree |
| 2014-11-01 |
Diane Trout | Convert samples app to use migrations.
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commit | commitdiff | tree |
| 2014-10-29 |
Diane Trout | Merge branch 'django1.7' of mus.cacr.caltech.edu:htsworkflow...
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commit | commitdiff | tree |
| 2014-10-29 |
Diane Trout | actually don't track the sqlite3 database
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commit | commitdiff | tree |
| 2014-10-27 |
Diane Trout | comment out benderjab dependency, as were not using...
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commit | commitdiff | tree |
| 2014-10-27 |
Diane Trout | Change the settings default to work with the two scoops...
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commit | commitdiff | tree |
| 2014-10-23 |
Diane Trout | import os, so we can use os.path.join
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commit | commitdiff | tree |
| 2014-09-24 |
Diane Trout | relax requirements to make it easier to install on...
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commit | commitdiff | tree |
| 2014-09-12 |
Diane Trout | make it easier to override variables in ENCODED class
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commit | commitdiff | tree |
| 2014-07-28 |
Diane Trout | add frozen package list
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commit | commitdiff | tree |
| 2014-07-26 |
Diane Trout | configure a mock keyring
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commit | commitdiff | tree |
| 2014-07-25 |
Diane Trout | make whitespace pep8 complient
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commit | commitdiff | tree |
| 2014-07-25 |
Diane Trout | Use two-scoop style multiple settings file.
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commit | commitdiff | tree |
| 2014-07-24 |
Diane Trout | DCC example code sets both content-type and accept...
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commit | commitdiff | tree |
| 2014-07-24 |
Diane Trout | pep8 whitespace cleanup.
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commit | commitdiff | tree |
| 2014-07-24 |
Diane Trout | create exception using modern python syntax
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commit | commitdiff | tree |
| 2014-07-24 |
Diane Trout | remove a commented out import
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commit | commitdiff | tree |
| 2014-07-24 |
Diane Trout | Flatten project hierarchy, moving djano applications...
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commit | commitdiff | tree |
| 2014-06-23 |
Diane Trout | whitespace cleanup
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commit | commitdiff | tree |
| 2014-06-23 |
Diane Trout | clean up for pep8 compliance.
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commit | commitdiff | tree |
| 2014-06-23 |
Diane Trout | code cleanup, remove commented out code and adjust...
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commit | commitdiff | tree |
| 2014-06-23 |
Diane Trout | Attempt to split common initial data from wold lab...
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commit | commitdiff | tree |
| 2014-06-23 |
Diane Trout | Remove very old misplaced initial data fixtures
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commit | commitdiff | tree |
| 2014-06-19 |
Diane Trout | Add fields list to a few ModelForms Meta class.
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commit | commitdiff | tree |
| 2014-06-19 |
Diane Trout | Rename get_query_set to get_queryset
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commit | commitdiff | tree |
| 2014-06-19 |
Diane Trout | Rename HttpResponse parameter mimetype to content_type
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commit | commitdiff | tree |
| 2014-06-19 |
Diane Trout | remove file created by typoing file name
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commit | commitdiff | tree |
| 2014-06-19 |
Diane Trout | Change unittest2 back into unittest.
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commit | commitdiff | tree |
| 2014-06-19 |
Diane Trout | Explicitly list initial_data.json for the test data...
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commit | commitdiff | tree |
| 2014-06-10 |
Diane Trout | Add post_json as some DCC objects are created with...
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commit | commitdiff | tree |
| 2014-06-10 |
Diane Trout | Rename headers to json_headers for requests (seemed...
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commit | commitdiff | tree |
| 2014-06-10 |
Diane Trout | Updates to jsonld context for the DCC schemas.
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commit | commitdiff | tree |
| 2014-06-10 |
Diane Trout | Update test_encoded test cases due to https now being...
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commit | commitdiff | tree |
| 2014-06-10 |
Diane Trout | DCC switched to https
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commit | commitdiff | tree |
| 2014-06-10 |
Diane Trout | Update fastqname code & test code to better support...
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commit | commitdiff | tree |
| 2014-06-10 |
Diane Trout | Directly generate compressed fastq files from HiSeq...
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commit | commitdiff | tree |
| 2014-06-10 |
Diane Trout | the filename templates were moved from condorfastq...
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commit | commitdiff | tree |
| 2014-06-10 |
Diane Trout | Indicate when desplit_fastq didn't get any files to...
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commit | commitdiff | tree |
| 2014-06-10 |
Diane Trout | Make sure we can load a run file that lacks alignment...
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commit | commitdiff | tree |
| 2014-06-10 |
Diane Trout | For some reason the previous integrety fixes, added...
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commit | commitdiff | tree |
| 2014-06-10 |
Diane Trout | Postgresql has referential integrety checking.
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commit | commitdiff | tree |
| 2014-06-10 |
Diane Trout | Ignore the path when comparing filenames from the md5...
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commit | commitdiff | tree |
| 2014-06-10 |
Diane Trout | use autoopen to access fastq files
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commit | commitdiff | tree |
| 2014-06-10 |
Diane Trout | Start implementing tool to compute library fastq quality
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commit | commitdiff | tree |
| 2014-06-10 |
Diane Trout | Just use the python 2 url parsers instead of trying...
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commit | commitdiff | tree |
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