projects
/
htsworkflow.git
/ shortlog
commit
grep
author
committer
pickaxe
?
search:
re
summary
| shortlog |
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
htsworkflow.git
2013-07-22
Diane Trout
Test changes to submission code.
commit
|
commitdiff
|
tree
|
snapshot
2013-07-22
Diane Trout
Generate manifest.txt files for submitting to ENCODE3.
commit
|
commitdiff
|
tree
|
snapshot
2013-07-22
Diane Trout
turtle writing improvements.
commit
|
commitdiff
|
tree
|
snapshot
2013-07-22
Diane Trout
Add a generator that returns analysis nodes from a...
commit
|
commitdiff
|
tree
|
snapshot
2013-07-20
Diane Trout
Add python namespace for encode3 RDF namespace
commit
|
commitdiff
|
tree
|
snapshot
2013-07-18
Diane Trout
Add function to list the names for submissions from...
commit
|
commitdiff
|
tree
|
snapshot
2013-07-17
Diane Trout
Add function to parse scp / ssh style URLs.
commit
|
commitdiff
|
tree
|
snapshot
2013-07-16
Diane Trout
Deleting commented out code.
commit
|
commitdiff
|
tree
|
snapshot
2013-07-08
Diane Trout
Update test to work with species -> species_name rename.
commit
|
commitdiff
|
tree
|
snapshot
2013-07-03
Diane Trout
Generate manifest files for ENCODE3
commit
|
commitdiff
|
tree
|
snapshot
2013-07-01
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
commit
|
commitdiff
|
tree
|
snapshot
2013-07-01
Diane Trout
Add the option to copy tree in addition to making a...
commit
|
commitdiff
|
tree
|
snapshot
2013-07-01
Diane Trout
Initial attempt to start generating trackHubs and manif...
commit
|
commitdiff
|
tree
|
snapshot
2013-07-01
Diane Trout
type checking more detailed than Literal doesn't work...
commit
|
commitdiff
|
tree
|
snapshot
2013-06-28
Diane Trout
Add option to copy source files for a submission.
commit
|
commitdiff
|
tree
|
snapshot
2013-06-18
Diane Trout
Further improve reliability of make_tree_from.
commit
|
commitdiff
|
tree
|
snapshot
2013-06-18
Diane Trout
copy_tree_from wasn't actually making any symlinks.
commit
|
commitdiff
|
tree
|
snapshot
2013-06-18
Diane Trout
Update tests for new version of redland rdf lib.
commit
|
commitdiff
|
tree
|
snapshot
2013-06-18
Diane Trout
Remove deprecated adminmedia template tag from loader.
commit
|
commitdiff
|
tree
|
snapshot
2013-06-18
Diane Trout
Replace deprecated django.contrib adminmedia with stati...
commit
|
commitdiff
|
tree
|
snapshot
2013-06-18
Diane Trout
Use proper User model import.
commit
|
commitdiff
|
tree
|
snapshot
2013-02-01
Diane Trout
Preliminary implementation of trackDb generation.
commit
|
commitdiff
|
tree
|
snapshot
2013-02-01
Diane Trout
Forgot to import an exception I used
commit
|
commitdiff
|
tree
|
snapshot
2013-02-01
Diane Trout
Make a sample key list to go along with our lane list
commit
|
commitdiff
|
tree
|
snapshot
2013-01-16
Diane Trout
Support scanning HiSeq runs with multiple analyses.
commit
|
commitdiff
|
tree
|
snapshot
2013-01-16
Diane Trout
Thrown an exception if we can't parse base calling...
commit
|
commitdiff
|
tree
|
snapshot
2013-01-15
Diane Trout
Start making documentation for htsworkflow.
commit
|
commitdiff
|
tree
|
snapshot
2013-01-09
Diane Trout
A better resolution to a possible circular dependency.
commit
|
commitdiff
|
tree
|
snapshot
2013-01-09
Diane Trout
Don't accidentally transform an object into a tuple.
commit
|
commitdiff
|
tree
|
snapshot
2013-01-08
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
commit
|
commitdiff
|
tree
|
snapshot
2013-01-08
Diane Trout
Try to make Aligned result directories optional in...
commit
|
commitdiff
|
tree
|
snapshot
2013-01-08
Diane Trout
Add unaligned stats files to hiseq test case
commit
|
commitdiff
|
tree
|
snapshot
2013-01-08
Diane Trout
Tweak timestamp format.
commit
|
commitdiff
|
tree
|
snapshot
2012-12-14
Diane Trout
Gerald's time-stamp format was inconsistent.
commit
|
commitdiff
|
tree
|
snapshot
2012-12-14
Diane Trout
Make my ChangeList sub-class compatibile with Django 1.3
commit
|
commitdiff
|
tree
|
snapshot
2012-12-13
Diane Trout
Make the inventory pages work with the new HTSChangeList.
commit
|
commitdiff
|
tree
|
snapshot
2012-12-13
Diane Trout
Django 1.4 requires the csrf token for posts.
commit
|
commitdiff
|
tree
|
snapshot
2012-12-13
Diane Trout
Use specific time formatting instead of locale '%c'
commit
|
commitdiff
|
tree
|
snapshot
2012-12-13
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkfl...
commit
|
commitdiff
|
tree
|
snapshot
2012-12-12
Diane Trout
Simplify linking fastq files to their library id.
commit
|
commitdiff
|
tree
|
snapshot
2012-12-08
Diane Trout
Add a FastqName class to create and parse standardized...
commit
|
commitdiff
|
tree
|
snapshot
2012-11-30
Diane Trout
Change my copied version of admin.changelist to a subclass.
commit
|
commitdiff
|
tree
|
snapshot
2012-11-30
Diane Trout
The formatting for the model name changed.
commit
|
commitdiff
|
tree
|
snapshot
2012-11-29
Diane Trout
Add a few more records for django db initial_data.json.
commit
|
commitdiff
|
tree
|
snapshot
2012-11-29
Diane Trout
Use unittest2's module hooks for setting up the django...
commit
|
commitdiff
|
tree
|
snapshot
2012-11-29
Diane Trout
Change csrf imports and database settings for django 1.4
commit
|
commitdiff
|
tree
|
snapshot
2012-11-29
Diane Trout
Remove prints that were being called in test code.
commit
|
commitdiff
|
tree
|
snapshot
2012-11-28
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
commit
|
commitdiff
|
tree
|
snapshot
2012-11-28
Diane Trout
Changed name= to verbose_name= for LibraryType.
commit
|
commitdiff
|
tree
|
snapshot
2012-11-28
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
commit
|
commitdiff
|
tree
|
snapshot
2012-11-28
Diane Trout
Make extra sure Django's setup test environment is...
commit
|
commitdiff
|
tree
|
snapshot
2012-11-28
Diane Trout
Convert to unittest2
commit
|
commitdiff
|
tree
|
snapshot
2012-11-28
Diane Trout
Convert to unittest2
commit
|
commitdiff
|
tree
|
snapshot
2012-11-27
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
commit
|
commitdiff
|
tree
|
snapshot
2012-11-27
Diane Trout
Ignoring the missing type RDF error for the page under...
commit
|
commitdiff
|
tree
|
snapshot
2012-11-27
Diane Trout
Add dependencies to the setup.py
commit
|
commitdiff
|
tree
|
snapshot
2012-11-20
Diane Trout
Test presence of species & species name on library...
commit
|
commitdiff
|
tree
|
snapshot
2012-11-20
Diane Trout
Correctly implement merging Notification & Manager...
commit
|
commitdiff
|
tree
|
snapshot
2012-11-20
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
commit
|
commitdiff
|
tree
|
snapshot
2012-11-20
Diane Trout
Renamed various django tests.py to test_module.py
commit
|
commitdiff
|
tree
|
snapshot
2012-11-20
Diane Trout
Ignore .tox directory
commit
|
commitdiff
|
tree
|
snapshot
2012-11-20
Diane Trout
Fix RDF schema problems with lane_number and species.
commit
|
commitdiff
|
tree
|
snapshot
2012-11-20
Diane Trout
Run the library detail page through RDF validation.
commit
|
commitdiff
|
tree
|
snapshot
2012-11-20
Diane Trout
Change add_default_schema to use pkg_resources feature...
commit
|
commitdiff
|
tree
|
snapshot
2012-11-20
Diane Trout
Add dependency information to the setup.py script
commit
|
commitdiff
|
tree
|
snapshot
2012-11-20
Diane Trout
rdf:Resource can be either a resource or a blank node.
commit
|
commitdiff
|
tree
|
snapshot
2012-11-20
Diane Trout
Uniquely merge BCC and Manager lists for sending notifi...
commit
|
commitdiff
|
tree
|
snapshot
2012-11-16
Diane Trout
Further attempts to validate RDF models.
commit
|
commitdiff
|
tree
|
snapshot
2012-11-14
Diane Trout
Add error message for typoing a result map filename.
commit
|
commitdiff
|
tree
|
snapshot
2012-11-14
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
commit
|
commitdiff
|
tree
|
snapshot
2012-10-11
Diane Trout
Catch another lookup error.
commit
|
commitdiff
|
tree
|
snapshot
2012-09-27
Diane Trout
older librdf wanted to include type information when...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-27
Diane Trout
When collecting files for a geo submission, group on...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-25
Diane Trout
This might actually generate soft file with raw & suppl...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-24
Diane Trout
Merge changing lane_number to string and sequence findi...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-24
Diane Trout
Add a log message to for debugging
commit
|
commitdiff
|
tree
|
snapshot
2012-09-24
Diane Trout
Define XHTML_RDF_DTD as None when we can't load the DTD
commit
|
commitdiff
|
tree
|
snapshot
2012-09-24
Diane Trout
Make the public html pages valid xhtml, and validate...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-24
Diane Trout
remove some dead commented out code.
commit
|
commitdiff
|
tree
|
snapshot
2012-09-20
Diane Trout
Fix (some) missing closing tags.
commit
|
commitdiff
|
tree
|
snapshot
2012-09-20
Diane Trout
Make a validation error message between different ages...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-20
Diane Trout
Also make the library index page conform to htsworkflow...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-20
Diane Trout
Minor tweaks to deal with the older version of librdf...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-19
Diane Trout
Use htsworkflow ontology to validate various RDF using...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-19
Diane Trout
Refactor property type validator to support multiple...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-19
Diane Trout
Add stub xhtml vocab ontology, to make model validation...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-18
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-18
Diane Trout
email.bcc should be a list, not a nested list.
commit
|
commitdiff
|
tree
|
snapshot
2012-09-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
commit
|
commitdiff
|
tree
|
snapshot
2012-09-18
Diane Trout
Improvements to rdfinfer.
commit
|
commitdiff
|
tree
|
snapshot
2012-09-18
Diane Trout
Change rdfhelp.dump_model so you can specify a destinat...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-18
Diane Trout
Progress using rdf model to link fastqs with flowcell...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
commit
|
commitdiff
|
tree
|
snapshot
2012-09-15
Diane Trout
Start implementing infering triples.
commit
|
commitdiff
|
tree
|
snapshot
2012-09-12
Diane Trout
Be more defensive if the database is missing some data...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-12
Diane Trout
fix a wrong variable name
commit
|
commitdiff
|
tree
|
snapshot
2012-09-12
Diane Trout
Tweaks to make the sample gather query faster.
commit
|
commitdiff
|
tree
|
snapshot
2012-09-12
Diane Trout
Add a helpful error message when we need the submission...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-12
Diane Trout
Another tweak to allow parser detection to work on...
commit
|
commitdiff
|
tree
|
snapshot
2012-09-11
Diane Trout
Better parser guessing when grabbing plain text from...
commit
|
commitdiff
|
tree
|
snapshot
next