docs/partition.sh

   1 # an example shell script to combine multiple region calls into one partition
   2 #
   3
   4 if [ -z "$1" ]; then
   5     PARTNAME=comb
   6 else
   7         PARTNAME=$1
   8 fi
   9
  10 if [ -z "$2" ]; then
  11         MINSIZE=400
  12 else
  13         MINSIZE=$2
  14 fi
  15
  16 N=0
  17 if [ $# -lt 2 ]; then
  18         echo 'usage: partition.sh name minSize datalist.file'
  19         echo
  20         echo 'where the datalist file is a list of region files'
  21         echo
  22 else
  23         while read line
  24         do
  25                 if [ $N -lt 1 ]; then
  26                         FILELIST=''
  27                 else
  28                         FILELIST=$FILELIST,
  29                 fi
  30                 FILELIST=$FILELIST$line
  31                 let N=N+1
  32         done < $3
  33         python $ERANGEPATH/partition.py $N.way $FILELIST $PARTNAME$N.part --minFeature $MINSIZE --nomerge --locid --norandom
  34 fi