8 usage = "usage: python %s infile outfile" % sys.argv[0]
14 infile = open(argv[1])
15 outfile = open(argv[2], "w")
17 lines = infile.readlines()
18 outputLines = rnaAToIFilter(lines)
20 for line in outputLines:
26 def rnaAToIFilter(snpPropertiesList):
28 for line in snpPropertiesList:
30 if fields[13] == "F" and fields[7] == "A-G":
31 outputLines.append(line)
32 elif fields[13] == "R" and fields[7] == "T-C":
33 outputLines.append(line)
38 if __name__ == '__main__':