test/testErange.py

   1 '''
   2 Runs all unit test for Erange.
   3 Functionality will eventually be incorporated into unittest in Python 2.7+
   4 Uses test suites until then
   5
   6 Created on Sep 8, 2010
   7
   8 @author: sau
   9 '''
  10
  11 import sys
  12 import unittest
  13 import testAnalyzeGO
  14 import testChksnp
  15 import testCommoncode
  16 import testGeneMrnaCounts
  17 import testGeneMrnaCountsWeighted
  18 #import testGetFasta
  19 import testGetNovelSNPs
  20 import testGetSNPGeneInfo
  21 import testGetSNPs
  22 import testMakeBamFromRds
  23 import testmakebedfromrds
  24 #import testMakeGraphs
  25 import testMakeRdsFromBam
  26 import testMakeSNPTrack
  27 import testMarkLinkers
  28 import testPeak
  29 import testPeaksToRegion
  30 import testProcessVelvet
  31 import testReadDataset
  32 import testRnaAToIFilter
  33 import testRnaEditing
  34 import testRNAPATH
  35 #import testTranscripts
  36
  37
  38 def main(argv=None):
  39     if not argv:
  40         argv = sys.argv
  41
  42     suite = unittest.TestSuite()
  43     suite.addTest(testAnalyzeGO.suite())
  44     suite.addTest(testChksnp.suite())
  45     suite.addTest(testCommoncode.suite())
  46     suite.addTest(testGeneMrnaCounts.suite())
  47     suite.addTest(testGeneMrnaCountsWeighted.suite())
  48     #suite.addTest(testGetFasta.suite())
  49     suite.addTest(testGetNovelSNPs.suite())
  50     suite.addTest(testGetSNPGeneInfo.suite())
  51     suite.addTest(testGetSNPs.suite())
  52     suite.addTest(testMakeBamFromRds.suite())
  53     suite.addTest(testmakebedfromrds.suite())
  54     #suite.addTest(testMakeGraphs.suite())
  55     suite.addTest(testMakeRdsFromBam.suite())
  56     suite.addTest(testMakeSNPTrack.suite())
  57     suite.addTest(testMarkLinkers.suite())
  58     suite.addTest(testPeak.suite())
  59     suite.addTest(testPeaksToRegion.suite())
  60     suite.addTest(testProcessVelvet.suite())
  61     suite.addTest(testReadDataset.suite())
  62     suite.addTest(testRnaAToIFilter.suite())
  63     suite.addTest(testRnaEditing.suite())
  64     suite.addTest(testRNAPATH.suite())
  65     #suite.addTest(testTranscripts.suite())
  66
  67     unittest.TextTestRunner(verbosity=2).run(suite)
  68
  69 if __name__ == '__main__':
  70     main(sys.argv)