test/testErange.py

   1 '''
   2 Runs all unit test for Erange.
   3 Functionality will eventually be incorporated into unittest in Python 2.7+
   4 Uses test suites until then
   5
   6 Created on Sep 8, 2010
   7
   8 @author: sau
   9 '''
  10
  11 import sys
  12 import unittest
  13 import testAnalyzeGO
  14 import testChksnp
  15 import testCommoncode
  16 import testGeneMrnaCounts
  17 #import testGetFasta
  18 import testGetNovelSNPs
  19 import testGetSNPGeneInfo
  20 import testGetSNPs
  21 import testMakeBamFromRds
  22 import testmakebedfromrds
  23 #import testMakeGraphs
  24 import testMakeRdsFromBam
  25 import testMakeSNPTrack
  26 import testMarkLinkers
  27 import testPeaksToRegion
  28 import testProcessVelvet
  29 import testReadDataset
  30 import testRnaAToIFilter
  31 import testRnaEditing
  32 import testRNAPATH
  33 import testTranscripts
  34
  35
  36 def main(argv=None):
  37     if not argv:
  38         argv = sys.argv
  39
  40     suite = unittest.TestSuite()
  41     suite.addTest(testAnalyzeGO.suite())
  42     suite.addTest(testChksnp.suite())
  43     suite.addTest(testCommoncode.suite())
  44     suite.addTest(testGeneMrnaCounts.suite())
  45     #suite.addTest(testGetFasta.suite())
  46     suite.addTest(testGetNovelSNPs.suite())
  47     suite.addTest(testGetSNPGeneInfo.suite())
  48     suite.addTest(testGetSNPs.suite())
  49     suite.addTest(testMakeBamFromRds.suite())
  50     suite.addTest(testmakebedfromrds.suite())
  51     #suite.addTest(testMakeGraphs.suite())
  52     suite.addTest(testMakeRdsFromBam.suite())
  53     suite.addTest(testMakeSNPTrack.suite())
  54     suite.addTest(testMarkLinkers.suite())
  55     suite.addTest(testPeaksToRegion.suite())
  56     suite.addTest(testProcessVelvet.suite())
  57     suite.addTest(testReadDataset.suite())
  58     suite.addTest(testRnaAToIFilter.suite())
  59     suite.addTest(testRnaEditing.suite())
  60     suite.addTest(testRNAPATH.suite())
  61     #suite.addTest(testTranscripts.suite())
  62
  63     unittest.TextTestRunner(verbosity=2).run(suite)
  64
  65 if __name__ == '__main__':
  66     main(sys.argv)