test/testRegion.py

   1 import unittest
   2 from erange import Region
   3
   4
   5 class TestRegion(unittest.TestCase):
   6
   7
   8     def setUp(self):
   9         pass
  10
  11
  12     def tearDown(self):
  13         pass
  14
  15
  16     def testRegion(self):
  17         factor = "foo"
  18         region = Region.Region(factor, "index", "chrom", "start", "stop", "numReads", "foldRatio", "multiP", "peakDescription", "shift")
  19         self.assertEquals(factor, region.factor)
  20
  21
  22     def testDirectionalRegion(self):
  23         factor = "foo"
  24         region = Region.DirectionalRegion(factor, "index", "chrom", "start", "stop", "numReads", "foldRatio", "multiP", "plusP", "leftP", "peakDescription", "shift")
  25         self.assertEquals(factor, region.factor)
  26
  27
  28     def testPrintDeirectionalRegionWithShift(self):
  29         factor = "foo"
  30         region = Region.DirectionalRegion(factor, 1, "chrom", 10, 100, 1.0, 0.5, 0.4, 0.3, 0.2, "peakDescription", 9)
  31         result = "foo1\tchrom\t10\t100\t1.0\t0.5\t0.4\t0.3\t0.2\tpeakDescription\t9"
  32         self.assertEquals(result, region.printRegionWithShift())
  33
  34
  35 def suite():
  36     suite = unittest.TestSuite()
  37     suite.addTest(unittest.makeSuite(TestRegion))
  38
  39     return suite
  40
  41
  42 if __name__ == "__main__":
  43     #import sys;sys.argv = ['', 'Test.testName']
  44     unittest.main()