test/testRnaEditing.py

   1 '''
   2 Created on Aug 23, 2010
   3
   4 @author: sau
   5 '''
   6 import unittest
   7 from erange import rnaEditing
   8
   9
  10 class TestRnaEditing(unittest.TestCase):
  11
  12
  13     def setUp(self):
  14         pass
  15
  16
  17     def tearDown(self):
  18         pass
  19
  20
  21     def testGetGenesWithMultipleSNPs(self):
  22         snpList = []
  23         self.assertEquals([], rnaEditing.getGenesWithMultipleSNPs(snpList))
  24
  25         snpList = [[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, "snp1"],
  26                    [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, "snp2"],
  27                    [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, "snp3"]
  28         ]
  29
  30         result = ["snp3", "snp2", "snp1"]
  31         self.assertEquals(result, rnaEditing.getGenesWithMultipleSNPs(snpList))
  32         result = []
  33         self.assertEquals(result, rnaEditing.getGenesWithMultipleSNPs(snpList, minCount=2))
  34
  35         snpList.append([1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, "snp3"])
  36         result = ["snp3"]
  37         self.assertEquals(result, rnaEditing.getGenesWithMultipleSNPs(snpList, minCount=2))
  38
  39
  40 def suite():
  41     suite = unittest.TestSuite()
  42     suite.addTest(unittest.makeSuite(TestRnaEditing))
  43
  44     return suite
  45
  46
  47 if __name__ == "__main__":
  48     #import sys;sys.argv = ['', 'Test.testName']
  49     unittest.main()