shiftDict = {}
chromosomeList = getChromosomeListToProcess(hitRDS, controlRDS, doControl)
for chromosome in chromosomeList:
+ #TODO: QForAli -Really? Use first chr shift value for all of them
if regionFinder.shiftValue == "learn":
learnShift(regionFinder, hitRDS, chromosome, logfilename, outfilename, outfile, useMulti, doControl, controlRDS, combine5p)
if __name__ == "__main__":
- main(sys.argv)
+ main(sys.argv)
\ No newline at end of file