Rewrite of findall.py to clean code. Configuration tested using

[erange.git] / getfasta.py

diff --git a/getfasta.py b/getfasta.py
index ea347e4aa44f1a21a0b7c54d11b407352ce91b6f..acae47d68c896d14cf7b894e63adac2552483291 100755 (executable)
--- a/getfasta.py
+++ b/getfasta.py
@@ -36,7 +36,7 @@ def main(argv=None):
     outfilename = args[2]
 
     getfasta(genome, regionfile, outfilename, options.seqsize, options.minHitThresh,
-             options.topRegions, options.maxsize, options.usePeaks, options.hitFile,
+             options.topRegions, options.maxsize, options.usePeaks, options.hitfile,
              options.doCache, options.doCompact)