convert standard analysis pipelines to use bam format natively

[erange.git] / getsplicefa.py

diff --git a/getsplicefa.py b/getsplicefa.py
index 197800e09fab70bf2824bcf3e9caa1ecfb364ef1..819675f26f869895fc12b8058daf195f02b2d07b 100755 (executable)
--- a/getsplicefa.py
+++ b/getsplicefa.py
@@ -20,6 +20,7 @@ def main(argv=None):
     delimiter = "|"
 
     usage = "usage: python getsplicefa.py genome ucscModels outfilename maxBorder [--verbose] [--spacer num]\
+            \n\twhere ucscModels is the gene model file in same format as the UCSC Table Browser\
             \n\twhere spacer is by default 2, and maxBorder should be readlen - (2 * spacer)\
             \n\tdelimiter is set to %s - edit the code to change it, if necessary\n" % delimiter