print verstring
delimiter = "|"
- usage = "usage: python %prog genome ucscModels outfilename maxBorder [--verbose] [--spacer num]\
+ usage = "usage: python getsplicefa.py genome ucscModels outfilename maxBorder [--verbose] [--spacer num]\
+ \n\twhere ucscModels is the gene model file in same format as the UCSC Table Browser\
\n\twhere spacer is by default 2, and maxBorder should be readlen - (2 * spacer)\
\n\tdelimiter is set to %s - edit the code to change it, if necessary\n" % delimiter
genome = args[0]
datafilename = args[1]
outfilename = args[2]
- maxBorder = args[3]
+ maxBorder = int(args[3])
except IndexError:
print usage
sys.exit(1)