@author: sau
'''
import os, unittest
-from Erange.commoncode import readDataset
-from Erange import getSNPs
+from erange import ReadDataset
+from erange import getSNPs
class TestGetSNPs(unittest.TestCase):
def setUp(self):
- self.rdsDNA = readDataset("testDNARDSForUnitTests.rds", True, "DNA", verbose=True)
+ self.rdsDNA = ReadDataset.ReadDataset("testDNARDSForUnitTests.rds", True, "DNA", verbose=True)
uniqueInsertList = [("uniqueID1", "chr1", 10, 20, "+", 1.0, "", ""),
("uniqueID2", "chr1", 100, 200, "+", 1.0, "", ""),
self.rdsDNA.insertUniqs(uniqueInsertList)
self.rdsDNA.insertMulti(multiInsertList)
+ self.rdsDNA.insertMetadata([("readsize", 100)])
def tearDown(self):