encode_submission/add-treatment-to-library.sparql

   1 # Produce list of submissions associated with a cell/replicate
   2 PREFIX xsd:<http://www.w3.org/2001/XMLSchema#>
   3 PREFIX rdfs:<http://www.w3.org/2000/01/rdf-schema#>
   4 PREFIX ucscSubmission:<http://jumpgate.caltech.edu/wiki/UcscSubmissionOntology#>
   5 PREFIX libraryOntology:<http://jumpgate.caltech.edu/wiki/LibraryOntology#>
   6 PREFIX daf: <http://jumpgate.caltech.edu/wiki/UcscDaf#>
   7 PREFIX ddf: <http://encodesubmit.ucsc.edu/pipeline/download_ddf#>
   8
   9 construct { ?library ddf:treatment ?treatment ;
  10                      ddf:protocol ?pcr . }
  11 WHERE {
  12    ?status ucscSubmission:has_file ?file .
  13    ?submission ucscSubmission:has_status ?status ;
  14                ucscSubmission:library_urn ?library ;
  15                ucscSubmission:name ?name .
  16    ?file ddf:treatment ?treatment ;
  17          ddf:protocol ?pcr .
  18 }
  19