htswanalysis/src/GetReadsInSnps/Makefile

   1 CPPFLAGS=-g -Wall -I/opt/local/include
   2 #LDFLAGS=-lgsl -lgslcblas -lm -lduma -L/opt/local/lib
   3 #CPPFLAGS=-g -Wall -O3 -I/opt/local/include
   4 LDFLAGS=-lgsl -lgslcblas -lm -L/opt/local/lib
   5
   6 all: patch_genome getReadsInSnps getRegionConsensus
   7
   8 patch_genome: patch_genome.cpp chrom_list.cpp util.cpp
   9
  10 getRegionConsensus: getRegionConsensus.cpp chrom_list.cpp util.cpp