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(parent: 6ac64a4) | patch
Added code to identify snps and update the gneome accordingly. This code has an insid...
authorTim Reddy Tim <treddy@hudsonalpha.org>
Tue, 23 Dec 2008 18:35:37 +0000 (18:35 +0000)
committerTim Reddy Tim <treddy@hudsonalpha.org>
Tue, 23 Dec 2008 18:35:37 +0000 (18:35 +0000)
commita68e996a16a0030f1d3a3f3decc8d7c98d5af433
tree7485c400ecc79085cef21fedac875d6f3dc50738tree | snapshot
parent6ac64a4bc8eb738cb7e1f7c67a9841afd7147fd2commit | diff
Added code to identify snps and update the gneome accordingly. This code has an insidious bug in which occasionally the first character of the output consensus sequences is modified, or the consensus sequence does not properly end, and has a few nonsense characters. So far, the bug has eluded my memory debugger.
htswanalysis/src/GetReadsInSnps/Makefile diff | blob | history
htswanalysis/src/GetReadsInSnps/chrom_list.cpp [new file with mode: 0644] blob
htswanalysis/src/GetReadsInSnps/chrom_list.h [new file with mode: 0644] blob
htswanalysis/src/GetReadsInSnps/getReadsInSnps.cpp diff | blob | history
htswanalysis/src/GetReadsInSnps/getRegionConsensus.cpp [new file with mode: 0755] blob
htswanalysis/src/GetReadsInSnps/patch_genome.cpp [new file with mode: 0644] blob
htswanalysis/src/GetReadsInSnps/util.cpp [new file with mode: 0644] blob
htswanalysis/src/GetReadsInSnps/util.h [new file with mode: 0644] blob
htsworkflow sequencing LIMS software