htsworkflow/frontend/eland_config/forms.py

   1 from django import forms
   2 from django.forms.util import ErrorList
   3
   4
   5 SPECIES_LIST = [#('--choose--', '--Choose--'),
   6                 ('hg18', 'Homo sapiens (Hg18)'),
   7                 ('Mm8', 'Mus musculus (Mm8)'),
   8                 ('arabv6', 'Arabadopsis Thaliana v6'),
   9                 ('other', 'Other species (Include in description)')]
  10
  11
  12 class DivErrorList(ErrorList):
  13   def __unicode__(self):
  14     return self.as_divs()
  15
  16   def as_divs(self):
  17     if not self: return ''
  18     return '<div class="errorlist">%s</div>' % (''.join(['<div class="error">%s</div>' % e for e in self]))
  19
  20
  21
  22 class ConfigForm(forms.Form):
  23
  24   flow_cell_number = forms.CharField(min_length=2)
  25   run_date = forms.DateTimeField()
  26   advanced_run = forms.BooleanField(required=False)
  27   read_length = forms.IntegerField(min_value=1, initial=32)
  28   #eland_repeat = forms.BooleanField()
  29
  30   #needs a for loop or something to allow for n configurations
  31   #analysis_type = forms.ChoiceField(choices=[('eland','eland')])
  32   lane1_species = forms.ChoiceField(choices=SPECIES_LIST)
  33   lane1_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
  34
  35   lane2_species = forms.ChoiceField(choices=SPECIES_LIST)
  36   lane2_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
  37
  38   lane3_species = forms.ChoiceField(choices=SPECIES_LIST)
  39   lane3_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
  40
  41   lane4_species = forms.ChoiceField(choices=SPECIES_LIST)
  42   lane4_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
  43
  44   lane5_species = forms.ChoiceField(choices=SPECIES_LIST)
  45   lane5_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
  46
  47   lane6_species = forms.ChoiceField(choices=SPECIES_LIST)
  48   lane6_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
  49
  50   lane7_species = forms.ChoiceField(choices=SPECIES_LIST)
  51   lane7_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
  52
  53   lane8_species = forms.ChoiceField(choices=SPECIES_LIST)
  54   lane8_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
  55
  56   notes = forms.CharField(widget=forms.Textarea(attrs={'cols':'70'}), required=False)
  57
  58   #lane_specific_read_length = forms.IntegerField(min_value=1)
  59
  60   #eland_genome_lanes = forms.MultipleChoiceField(choices=[('lane1','1'),
  61   #                                              ('lane2','2'),
  62   #                                              ('lane3','3'),
  63   #                                              ('lane4','4'),
  64   #                                              ('lane5','5'),
  65   #                                              ('lane6','6'),
  66   #                                              ('lane7','7'),
  67   #                                              ('lane8','8') ])
  68
  69   #eland_genome = forms.ChoiceField(choices=)
  70
  71   #use_bases_lanes = forms.MultipleChoiceField(choices=[('lane1','1'),
  72   #                                              ('lane2','2'),
  73   #                                              ('lane3','3'),
  74   #                                              ('lane4','4'),
  75   #                                              ('lane5','5'),
  76   #                                              ('lane6','6'),
  77   #                                              ('lane7','7'),
  78   #                                              ('lane8','8') ])
  79
  80   #use_bases_mask = forms.CharField()
  81
  82   #sequence_format = forms.ChoiceField(choices=[('scarf', 'scarf')])
  83
  84
  85
  86   #subject = forms.CharField(max_length=100)
  87   #message = forms.CharField()
  88   #sender = forms.EmailField()
  89   #cc_myself = forms.BooleanField()
  90
  91   def as_custom(self):
  92     """
  93     Displays customized html output
  94     """
  95     html = []
  96
  97     fcn = self['flow_cell_number']
  98
  99     html.append(fcn.label_tag() + ': ' + str(fcn) + str(fcn.errors) + '<br />')
 100
 101     run_date = self['run_date']
 102     html.append(run_date.label_tag() + ': ' + str(run_date) + str(run_date.errors) + '<br />')
 103
 104     arun = self['advanced_run']
 105     html.append(arun.label_tag() + ': ' + str(arun) + str(arun.errors) + '<br />')
 106
 107     rl = self['read_length']
 108     html.append(rl.label_tag() + ': ' + str(rl) + str(rl.errors) + '<br /><br />')
 109
 110     html.append('<table border="0">')
 111     html.append(' <tr><td>%s</td><td>%s</td><td>%s</td></tr>' \
 112                 % ('Lane', 'Species', 'Description'))
 113
 114     l1s = self['lane1_species']
 115     l1d = self['lane1_description']
 116     html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
 117                 % ('1', str(l1s), str(l1s.errors), str(l1d), str(l1d.errors)))
 118
 119     l2s = self['lane2_species']
 120     l2d = self['lane2_description']
 121     html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
 122                 % ('2', str(l2s), str(l2s.errors), str(l2d), str(l2d.errors)))
 123
 124     l3s = self['lane3_species']
 125     l3d = self['lane3_description']
 126     html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
 127                 % ('3', str(l3s), str(l3s.errors), str(l3d), str(l3d.errors)))
 128
 129     l4s = self['lane4_species']
 130     l4d = self['lane4_description']
 131     html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
 132                 % ('4', str(l4s), str(l4s.errors), str(l4d), str(l4d.errors)))
 133
 134     l5s = self['lane5_species']
 135     l5d = self['lane5_description']
 136     html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
 137                 % ('5', str(l5s), str(l5s.errors), str(l5d), str(l5d.errors)))
 138
 139     l6s = self['lane6_species']
 140     l6d = self['lane6_description']
 141     html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
 142                 % ('6', str(l6s), str(l6s.errors), str(l6d), str(l6d.errors)))
 143
 144     l7s = self['lane7_species']
 145     l7d = self['lane7_description']
 146     html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
 147                 % ('7', str(l7s), str(l7s.errors), str(l7d), str(l7d.errors)))
 148
 149     l8s = self['lane8_species']
 150     l8d = self['lane8_description']
 151     html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
 152                 % ('8', str(l8s), str(l8s.errors), str(l8d), str(l8d.errors)))
 153
 154     html.append('</table><br />')
 155
 156     notes = self['notes']
 157     html.append('<p>Notes:</p>')
 158     html.append(' %s<br />' % (str(notes)))
 159
 160     return '\n'.join(html)
 161
 162
 163