1 from htsworkflow.frontend.experiments.models import \
2 FlowCell, DataRun, DataFile, FileType, ClusterStation, Sequencer, Lane
3 from django.contrib import admin
4 from django.contrib.admin.widgets import FilteredSelectMultiple
5 from django.forms import ModelForm
6 from django.forms.fields import Field, CharField
7 from django.forms.widgets import TextInput
8 from django.utils.translation import ugettext_lazy as _
10 class DataFileForm(ModelForm):
14 class DataFileInline(admin.TabularInline):
17 raw_id_fields = ('library',)
20 class DataRunOptions(admin.ModelAdmin):
33 'fields': (('flowcell', 'run_status'),
34 ('runfolder_name', 'cycle_start', 'cycle_stop'),
40 inlines = [ DataFileInline ]
41 #list_filter = ('run_status', 'run_start_time')
42 admin.site.register(DataRun, DataRunOptions)
45 class FileTypeAdmin(admin.ModelAdmin):
46 list_display = ('name', 'mimetype', 'regex')
47 admin.site.register(FileType, FileTypeAdmin)
49 # lane form setup needs to come before Flowcell form config
50 # as flowcell refers to the LaneInline class
51 class LaneForm(ModelForm):
52 comment = CharField(widget=TextInput(attrs={'size':'80'}), required=False)
57 class LaneInline(admin.StackedInline):
59 Controls display of Lanes on the Flowcell form.
64 raw_id_fields = ('library',)
67 'fields': ('lane_number', 'flowcell',
69 ('pM', 'cluster_estimate', 'status'),
74 class LaneOptions(admin.ModelAdmin):
76 Controls display of Lane browser
78 search_fields = ('=flowcell__flowcell_id', 'library__id', 'library__library_name' )
79 list_display = ('flowcell', 'lane_number', 'library', 'comment')
82 'fields': ('lane_number', 'flowcell',
84 ('pM', 'cluster_estimate'))
87 'classes': ('collapse', ),
88 'fields': ('comment', )
91 admin.site.register(Lane, LaneOptions)
93 class FlowCellOptions(admin.ModelAdmin):
94 date_hierarchy = "run_date"
96 search_fields = ('flowcell_id',
98 'cluster_station__name',
100 'lane__library__library_name')
101 list_display = ('flowcell_id','run_date','Lanes')
102 list_filter = ('sequencer','cluster_station')
105 'fields': ('run_date', ('flowcell_id','cluster_station','sequencer'),
106 ('read_length', 'control_lane', 'paired_end'),)
108 ('Notes:', { 'fields': ('notes',),}),
114 def formfield_for_dbfield(self, db_field, **kwargs):
115 field = super(FlowCellOptions, self).formfield_for_dbfield(db_field,
117 # Override field attributes
118 if db_field.name == "notes":
119 field.widget.attrs["rows"] = "3"
121 admin.site.register(FlowCell, FlowCellOptions)
123 class ClusterStationOptions(admin.ModelAdmin):
124 list_display = ('name', )
125 fieldsets = ( ( None, { 'fields': ( 'name', ) } ), )
126 admin.site.register(ClusterStation, ClusterStationOptions)
128 class SequencerOptions(admin.ModelAdmin):
129 list_display = ('name', )
130 fieldsets = ( ( None, { 'fields': ( 'name', ) } ), )
131 admin.site.register(Sequencer, SequencerOptions)