htsworkflow/frontend/templates/experiments/flowcell_detail.html

   1 {% extends "base_site.html" %}
   2 {% load adminmedia humanize i18n %}
   3 {% block extrahead %}
   4     <!-- App Stuff -->
   5     <link type="text/css" rel="stylesheet" href="/static/css/app.css" />
   6     <script type="text/javascript" src="/static/js/jquery.min.js"></script>
   7
   8     {% block additional_javascript %}
   9     {% endblock %}
  10 {% endblock %}
  11
  12 {% block content %}
  13 <div id="flowcell_detail">
  14   <h2>About this Flowcell</h2>
  15   <b>Flowcell</b>:
  16     <a href="{{flowcell.get_absolute_url}}" property="libns:flowcell_id">{{flowcell.flowcell_id}}</a><br/>
  17   <b>Run Date</b>:
  18     <span property="libns:date" content="{{flowcell.run_date|date:'Y-m-d\TH:i:s'}}" datatype="xsd:dateTime">{{ flowcell.run_date }}</span><br/>
  19   <b>Type</b>:
  20     <span property="libns:flowcell_type">{{flowcell.flowcell_type}}</span><br/>
  21   <b>Read Length</b>:
  22     <span property="libns:read_length">{{flowcell.read_length}}</span><br/>
  23   <b>Control Lane</b>:
  24     <span property="libns:control_lane">{{flowcell.control_lane}}</span><br/>
  25
  26   <b>Notes</b>:
  27     <pre property="libns:flowcell_notes">{{flowcell.notes}}</pre>
  28   <div class="htswdetail">
  29     <h2>Lanes</h2>
  30     <table>
  31       <thead>
  32        <tr>
  33          <td>Lane</td>
  34          <td>Library ID</td>
  35          <td>Library Name</td>
  36          <td>Species</td>
  37          <td>Comment</td>
  38        </tr>
  39       </thead>
  40       <tbody>
  41       {% for lane in lanes %}
  42         <tr rel="libns:has_lane" resource="{{lane.get_absolute_url}}" >
  43           <td><a href="{{lane.get_absolute_url}}">
  44               <span property="libns:lane_number">{{lane.lane_number}}</span></a></td>
  45           <td><a href="{{lane.library.get_absolute_url}}"
  46                  rel="libns:library"><span property="libns:library_id"
  47               >{{lane.library.id}}</span></a></td>
  48           <td><a href="{{lane.library.get_absolute_url}}" rel="libns:library"><span property="libns:name">{{lane.library.library_name}}</span></a></td>
  49           <td><a href="{{lane.library.library_species.get_absolute_url}}" rel="libns:species">
  50               <span property="libns:species_name">{{ lane.library.library_species.scientific_name }}</span></a></td>
  51           <td><span property="libns:comment">{{lane.comment}}</span></td>
  52         </tr>
  53       {% endfor %}
  54       </tbody>
  55     </table>
  56     </div>
  57     <div class="htsw_flowcell_ivc">
  58     {% for run in flowcell.datarun_set.all %}
  59        <h2>Run {{ run.runfolder_name }}</h2>
  60        <table>
  61          <thead>
  62            <tr>
  63              <td>Lane</td>
  64              <td>IVC All</td>
  65              <td>IVC Call</td>
  66              <td>IVC Percent Base</td>
  67              <td>IVC Percent Base All</td>
  68              <td>IVC Percent Base Called</td>
  69          </thead>
  70          <tbody>
  71             {% for lane_id, lane_file_set in run.lane_files.items %}
  72             {% if lane_file_set.ivc_all %}
  73             <tr>
  74               <td>{{ lane_id }}</td>
  75               <td>
  76                 <a href="{{ lane_file_set.ivc_all.get_absolute_url }}">
  77                 <img height="84" width="126" src="{{ lane_file_set.ivc_all.get_absolute_url }}"/></a>
  78               </td>
  79               <td>
  80                 <a href="{{ lane_file_set.ivc_call.get_absolute_url }}">
  81                 <img height="84" width="126" src="{{ lane_file_set.ivc_call.get_absolute_url }}"/>
  82                 </a>
  83               </td>
  84               <td>
  85                 <a href="{{ lane_file_set.ivc_percent_base.get_absolute_url }}">
  86                 <img height="84" width="126" src="{{ lane_file_set.ivc_percent_base.get_absolute_url }}"/>
  87                 </a>
  88               </td>
  89               <td>
  90                 <a href="{{ lane_file_set.ivc_percent_all.get_absolute_url }}">
  91                 <img height="84" width="126" src="{{ lane_file_set.ivc_percent_all.get_absolute_url }}"/>
  92                 </a>
  93               </td>
  94               <td>
  95                 <a href="{{ lane_file_set.ivc_percent_call.get_absolute_url }}">
  96                 <img height="84" width="126" src="{{ lane_file_set.ivc_percent_call.get_absolute_url }}"/>
  97                 </a>
  98               </td>
  99             </tr>
 100             {% endif %}
 101             {% endfor %}
 102          </tbody>
 103        </table>
 104     {% endfor %}
 105     </div>
 106 </div>
 107 {% endblock %}