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(parent: 83c982d) | patch
Generate manifest.txt files for submitting to ENCODE3.
authorDiane Trout <diane@ghic.org>
Mon, 22 Jul 2013 19:48:53 +0000 (12:48 -0700)
committerDiane Trout <diane@ghic.org>
Mon, 22 Jul 2013 19:48:53 +0000 (12:48 -0700)
commitfbebf34fa2f5842a2ab1eb8319176c82587fe3bb
tree51bda1c304dbf551cdbe1058b7b95236f6d65629tree | snapshot
parent83c982d26c5ffa12b53edfae7154ccc24fca210fcommit | diff
Generate manifest.txt files for submitting to ENCODE3.

Change trackhub generation from my previous template version to use
the Daler trackhub code.

This includes a feature to complain if you offer a submission set
name that diesn't exist.

Also the samples query returns all the submission components in
a single query instead of one of a time. (Which is much faster
way of doing things).
encode_submission/encode3.py diff | blob | history
htsworkflow/submission/trackhub_submission.py diff | blob | history
htsworkflow/templates/trackhub_samples.sparql diff | blob | history
htsworkflow/templates/trackhub_term_values.sparql [new file with mode: 0644] blob
htsworkflow sequencing LIMS software