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2013-07-22	Diane Trout	Generate manifest.txt files for submitting to ENCODE3.	commit \| commitdiff \| tree
2013-07-22	Diane Trout	turtle writing improvements.	commit \| commitdiff \| tree
2013-07-22	Diane Trout	Add a generator that returns analysis nodes from a...	commit \| commitdiff \| tree
2013-07-20	Diane Trout	Add python namespace for encode3 RDF namespace	commit \| commitdiff \| tree
2013-07-18	Diane Trout	Add function to list the names for submissions from...	commit \| commitdiff \| tree
2013-07-17	Diane Trout	Add function to parse scp / ssh style URLs.	commit \| commitdiff \| tree
2013-07-16	Diane Trout	Deleting commented out code.	commit \| commitdiff \| tree
2013-07-08	Diane Trout	Update test to work with species -> species_name rename.	commit \| commitdiff \| tree
2013-07-03	Diane Trout	Generate manifest files for ENCODE3	commit \| commitdiff \| tree
2013-07-01	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-07-01	Diane Trout	Add the option to copy tree in addition to making a...	commit \| commitdiff \| tree
2013-07-01	Diane Trout	Initial attempt to start generating trackHubs and manifest...	commit \| commitdiff \| tree
2013-07-01	Diane Trout	type checking more detailed than Literal doesn't work...	commit \| commitdiff \| tree
2013-06-28	Diane Trout	Add option to copy source files for a submission.	commit \| commitdiff \| tree
2013-06-18	Diane Trout	Further improve reliability of make_tree_from.	commit \| commitdiff \| tree
2013-06-18	Diane Trout	copy_tree_from wasn't actually making any symlinks.	commit \| commitdiff \| tree
2013-06-18	Diane Trout	Update tests for new version of redland rdf lib.	commit \| commitdiff \| tree
2013-06-18	Diane Trout	Remove deprecated adminmedia template tag from loader.	commit \| commitdiff \| tree
2013-06-18	Diane Trout	Replace deprecated django.contrib adminmedia with staticfiles.	commit \| commitdiff \| tree
2013-06-18	Diane Trout	Use proper User model import.	commit \| commitdiff \| tree
2013-02-01	Diane Trout	Preliminary implementation of trackDb generation.	commit \| commitdiff \| tree
2013-02-01	Diane Trout	Forgot to import an exception I used	commit \| commitdiff \| tree
2013-02-01	Diane Trout	Make a sample key list to go along with our lane list	commit \| commitdiff \| tree
2013-01-16	Diane Trout	Support scanning HiSeq runs with multiple analyses.	commit \| commitdiff \| tree
2013-01-16	Diane Trout	Thrown an exception if we can't parse base calling...	commit \| commitdiff \| tree
2013-01-15	Diane Trout	Start making documentation for htsworkflow.	commit \| commitdiff \| tree
2013-01-09	Diane Trout	A better resolution to a possible circular dependency.	commit \| commitdiff \| tree
2013-01-09	Diane Trout	Don't accidentally transform an object into a tuple.	commit \| commitdiff \| tree
2013-01-08	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-01-08	Diane Trout	Try to make Aligned result directories optional in...	commit \| commitdiff \| tree
2013-01-08	Diane Trout	Add unaligned stats files to hiseq test case	commit \| commitdiff \| tree
2013-01-08	Diane Trout	Tweak timestamp format.	commit \| commitdiff \| tree
2012-12-14	Diane Trout	Gerald's time-stamp format was inconsistent.	commit \| commitdiff \| tree
2012-12-14	Diane Trout	Make my ChangeList sub-class compatibile with Django 1.3	commit \| commitdiff \| tree
2012-12-13	Diane Trout	Make the inventory pages work with the new HTSChangeList.	commit \| commitdiff \| tree
2012-12-13	Diane Trout	Django 1.4 requires the csrf token for posts.	commit \| commitdiff \| tree
2012-12-13	Diane Trout	Use specific time formatting instead of locale '%c'	commit \| commitdiff \| tree
2012-12-13	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2012-12-12	Diane Trout	Simplify linking fastq files to their library id.	commit \| commitdiff \| tree
2012-12-08	Diane Trout	Add a FastqName class to create and parse standardized...	commit \| commitdiff \| tree
2012-11-30	Diane Trout	Change my copied version of admin.changelist to a subclass.	commit \| commitdiff \| tree
2012-11-30	Diane Trout	The formatting for the model name changed.	commit \| commitdiff \| tree
2012-11-29	Diane Trout	Add a few more records for django db initial_data.json.	commit \| commitdiff \| tree
2012-11-29	Diane Trout	Use unittest2's module hooks for setting up the django...	commit \| commitdiff \| tree
2012-11-29	Diane Trout	Change csrf imports and database settings for django 1.4	commit \| commitdiff \| tree
2012-11-29	Diane Trout	Remove prints that were being called in test code.	commit \| commitdiff \| tree
2012-11-28	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2012-11-28	Diane Trout	Changed name= to verbose_name= for LibraryType.	commit \| commitdiff \| tree
2012-11-28	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2012-11-28	Diane Trout	Make extra sure Django's setup test environment is...	commit \| commitdiff \| tree
2012-11-28	Diane Trout	Convert to unittest2	commit \| commitdiff \| tree
2012-11-28	Diane Trout	Convert to unittest2	commit \| commitdiff \| tree
2012-11-27	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2012-11-27	Diane Trout	Ignoring the missing type RDF error for the page under...	commit \| commitdiff \| tree
2012-11-27	Diane Trout	Add dependencies to the setup.py	commit \| commitdiff \| tree
2012-11-20	Diane Trout	Test presence of species & species name on library...	commit \| commitdiff \| tree
2012-11-20	Diane Trout	Correctly implement merging Notification & Manager...	commit \| commitdiff \| tree
2012-11-20	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2012-11-20	Diane Trout	Renamed various django tests.py to test_module.py	commit \| commitdiff \| tree
2012-11-20	Diane Trout	Ignore .tox directory	commit \| commitdiff \| tree
2012-11-20	Diane Trout	Fix RDF schema problems with lane_number and species.	commit \| commitdiff \| tree
2012-11-20	Diane Trout	Run the library detail page through RDF validation.	commit \| commitdiff \| tree
2012-11-20	Diane Trout	Change add_default_schema to use pkg_resources feature...	commit \| commitdiff \| tree
2012-11-20	Diane Trout	Add dependency information to the setup.py script	commit \| commitdiff \| tree
2012-11-20	Diane Trout	rdf:Resource can be either a resource or a blank node.	commit \| commitdiff \| tree
2012-11-20	Diane Trout	Uniquely merge BCC and Manager lists for sending notificatio...	commit \| commitdiff \| tree
2012-11-16	Diane Trout	Further attempts to validate RDF models.	commit \| commitdiff \| tree
2012-11-14	Diane Trout	Add error message for typoing a result map filename.	commit \| commitdiff \| tree
2012-11-14	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2012-10-11	Diane Trout	Catch another lookup error.	commit \| commitdiff \| tree
2012-09-27	Diane Trout	older librdf wanted to include type information when...	commit \| commitdiff \| tree
2012-09-27	Diane Trout	When collecting files for a geo submission, group on...	commit \| commitdiff \| tree
2012-09-25	Diane Trout	This might actually generate soft file with raw & supplement...	commit \| commitdiff \| tree
2012-09-24	Diane Trout	Merge changing lane_number to string and sequence finding...	commit \| commitdiff \| tree
2012-09-24	Diane Trout	Add a log message to for debugging	commit \| commitdiff \| tree
2012-09-24	Diane Trout	Define XHTML_RDF_DTD as None when we can't load the DTD	commit \| commitdiff \| tree
2012-09-24	Diane Trout	Make the public html pages valid xhtml, and validate...	commit \| commitdiff \| tree
2012-09-24	Diane Trout	remove some dead commented out code.	commit \| commitdiff \| tree
2012-09-20	Diane Trout	Fix (some) missing closing tags.	commit \| commitdiff \| tree
2012-09-20	Diane Trout	Make a validation error message between different ages...	commit \| commitdiff \| tree
2012-09-20	Diane Trout	Also make the library index page conform to htsworkflow...	commit \| commitdiff \| tree
2012-09-20	Diane Trout	Minor tweaks to deal with the older version of librdf...	commit \| commitdiff \| tree
2012-09-19	Diane Trout	Use htsworkflow ontology to validate various RDF using...	commit \| commitdiff \| tree
2012-09-19	Diane Trout	Refactor property type validator to support multiple...	commit \| commitdiff \| tree
2012-09-19	Diane Trout	Add stub xhtml vocab ontology, to make model validation...	commit \| commitdiff \| tree
2012-09-18	Diane Trout	Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htsworkflow	commit \| commitdiff \| tree
2012-09-18	Diane Trout	email.bcc should be a list, not a nested list.	commit \| commitdiff \| tree
2012-09-18	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2012-09-18	Diane Trout	Improvements to rdfinfer.	commit \| commitdiff \| tree
2012-09-18	Diane Trout	Change rdfhelp.dump_model so you can specify a destination...	commit \| commitdiff \| tree
2012-09-18	Diane Trout	Progress using rdf model to link fastqs with flowcell...	commit \| commitdiff \| tree
2012-09-18	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2012-09-15	Diane Trout	Start implementing infering triples.	commit \| commitdiff \| tree
2012-09-12	Diane Trout	Be more defensive if the database is missing some data...	commit \| commitdiff \| tree
2012-09-12	Diane Trout	fix a wrong variable name	commit \| commitdiff \| tree
2012-09-12	Diane Trout	Tweaks to make the sample gather query faster.	commit \| commitdiff \| tree
2012-09-12	Diane Trout	Add a helpful error message when we need the submission...	commit \| commitdiff \| tree
2012-09-12	Diane Trout	Another tweak to allow parser detection to work on...	commit \| commitdiff \| tree
2012-09-11	Diane Trout	Better parser guessing when grabbing plain text from...	commit \| commitdiff \| tree
2012-09-10	Diane Trout	Use the same model for building fastqs as for building...	commit \| commitdiff \| tree
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