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store flowcell name in the triple store if its known
author
Diane Trout
<diane@caltech.edu>
Fri, 27 Mar 2015 18:05:05 +0000
(11:05 -0700)
committer
Diane Trout
<diane@caltech.edu>
Fri, 27 Mar 2015 18:13:12 +0000
(11:13 -0700)
htsworkflow/submission/submission.py
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diff --git
a/htsworkflow/submission/submission.py
b/htsworkflow/submission/submission.py
index ed4d898ec919fdb66909ad810bd249e860f38b2a..9cd9dc8d38e0ad08a027d17c64113c65072f42b5 100644
(file)
--- a/
htsworkflow/submission/submission.py
+++ b/
htsworkflow/submission/submission.py
@@
-34,6
+34,7
@@
class Submission(object):
self.submissionSet = get_submission_uri(self.name)
self.submissionSetNS = RDF.NS(str(self.submissionSet) + '#')
self.libraryNS = RDF.NS('{0}/library/'.format(host))
self.submissionSet = get_submission_uri(self.name)
self.submissionSetNS = RDF.NS(str(self.submissionSet) + '#')
self.libraryNS = RDF.NS('{0}/library/'.format(host))
+ self.flowcellNS = RDF.NS('{0}/flowcell/'.format(host))
self.__view_map = None
self.__view_map = None
@@
-195,6
+196,11
@@
class Submission(object):
s = RDF.Statement(fileNode, model_term, toTypedNode(value))
self.model.append(s)
s = RDF.Statement(fileNode, model_term, toTypedNode(value))
self.model.append(s)
+ if 'flowcell' in fqname:
+ value = self.flowcellNS[fqname['flowcell'] + '/']
+ s = RDF.Statement(fileNode, libraryOntology['flowcell'], value)
+ self.model.append(s)
+
def add_label(self, file_type, file_node, lib_node):
"""Add rdfs:label to a file node
"""
def add_label(self, file_type, file_node, lib_node):
"""Add rdfs:label to a file node
"""