I was passing in the ElementTree xml into the base class constructor instead of
an integer representing which 'end' the sample is from.
Which when working with single ended ElandLanes ended up with the ElementTree node
instead of none (which showed up in the UI).
LANE = "ElandLane"
def __init__(self, pathname=None, lane_id=None, end=None, genome_map=None, eland_type=None, xml=None):
- super(ElandLane, self).__init__(pathname, lane_id, xml)
+ super(ElandLane, self).__init__(pathname, lane_id, end)
self._mapped_reads = None
self._match_codes = None