| 2009-05-11 |
Diane Trout | Fix parameter list for base class.
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commit | commitdiff | tree |
| 2009-05-06 |
Diane Trout | Update htsworkflow.util.fctracker module to work with...
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commit | commitdiff | tree |
| 2009-05-05 |
Diane Trout | Update the django app to report "raw reads" for a sequence...
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commit | commitdiff | tree |
| 2009-05-05 |
Diane Trout | Handle lanes that were only sequenced.
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commit | commitdiff | tree |
| 2009-05-05 |
Diane Trout | Return NaN, NaN if a mean +/- deviation value was undefined...
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commit | commitdiff | tree |
| 2009-05-05 |
Diane Trout | Allow overriding the queued commands environment.
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commit | commitdiff | tree |
| 2009-05-01 |
Diane Trout | Add wait_for_ipar option to the spool watcher config...
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commit | commitdiff | tree |
| 2009-04-30 |
Diane Trout | Allow mapping library IDs to the library primary key
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commit | commitdiff | tree |
| 2009-04-24 |
Diane Trout | add --clean option to runfolder
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commit | commitdiff | tree |
| 2009-04-24 |
Diane Trout | Allow picking runfolder variant we should be trying...
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commit | commitdiff | tree |
| 2009-04-08 |
Diane Trout | Stop assuming that library_id == pk.
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commit | commitdiff | tree |
| 2009-04-04 |
Diane Trout | Don't crash if we can't find the flowcell run xml file
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commit | commitdiff | tree |
| 2009-04-04 |
Diane Trout | Display the affiliations on the public library detail...
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commit | commitdiff | tree |
| 2009-04-01 |
Diane Trout | Show the "Amplified from sample" as the parent library...
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commit | commitdiff | tree |
| 2009-03-31 |
Diane Trout | Use the image directory name to detect what type of...
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commit | commitdiff | tree |
| 2009-03-31 |
Diane Trout | Don't attempt to save xml for a matrix in firecrest...
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commit | commitdiff | tree |
| 2009-03-31 |
Diane Trout | remove some useless debugging print statements
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commit | commitdiff | tree |
| 2009-03-31 |
Diane Trout | provide an error message if no run is found with the...
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commit | commitdiff | tree |
| 2009-03-30 |
Diane Trout | Add unit test to check that the crosstalk matrix was...
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commit | commitdiff | tree |
| 2009-03-30 |
Diane Trout | IPAR detection is more reliable than firecrest so do...
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commit | commitdiff | tree |
| 2009-03-30 |
Diane Trout | Allow specifying a run instead of just scanning the...
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commit | commitdiff | tree |
| 2009-03-30 |
Diane Trout | Add some logging code to report what the program is...
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commit | commitdiff | tree |
| 2009-03-28 |
Diane Trout | For pipeline 1.1rc1 or 1.3.2, look for the matrix files...
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commit | commitdiff | tree |
| 2009-03-28 |
Diane Trout | Move sample data from simulate_runfolder into testdata
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commit | commitdiff | tree |
| 2009-03-25 |
Diane Trout | Make the visiable names match how the "group" and ...
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commit | commitdiff | tree |
| 2009-03-20 |
Diane Trout | Consume output form the subprocesses
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commit | commitdiff | tree |
| 2009-03-18 |
Diane Trout | Actually we want fastq files, not scarf files
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commit | commitdiff | tree |
| 2009-03-18 |
Diane Trout | Generate a gerald config file, even if the genome is...
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commit | commitdiff | tree |
| 2009-03-18 |
Diane Trout | provide more options for picking how much logging info...
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commit | commitdiff | tree |
| 2009-03-18 |
Diane Trout | only report cwd when starting the queue monitor, not...
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commit | commitdiff | tree |
| 2009-03-18 |
Diane Trout | ignore *.py[co] files
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commit | commitdiff | tree |
| 2009-03-16 |
Diane Trout | Parse runfolders generated with IPAR 1.3 and pipeline...
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commit | commitdiff | tree |
| 2009-03-12 |
Diane Trout | Use django's FilteredSelectMultiple javascript widget...
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commit | commitdiff | tree |
| 2009-03-12 |
Diane Trout | allow searching by cluster station or sequencer name...
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commit | commitdiff | tree |
| 2009-03-10 |
Diane Trout | We can't search linked tables. This is a problem that...
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commit | commitdiff | tree |
| 2009-03-10 |
Diane Trout | The public library page needed to pass eland.genome_map...
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commit | commitdiff | tree |
| 2009-03-10 |
Diane Trout | Improve support for eland searching a single fasta...
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commit | commitdiff | tree |
| 2009-03-10 |
Diane Trout | Use gigio's fully name instead of nickname
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commit | commitdiff | tree |
| 2009-03-10 |
Diane Trout | Let cluster_station and sequencer default to the first...
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commit | commitdiff | tree |
| 2009-03-09 |
Diane Trout | replace % with %% in the library names, so retrieve...
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commit | commitdiff | tree |
| 2009-03-09 |
Diane Trout | Change flowcell admin index page to include a formatted...
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commit | commitdiff | tree |
| 2009-03-09 |
Diane Trout | Change default picomolarity to 5, and allow overriding...
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commit | commitdiff | tree |
| 2009-03-09 |
Diane Trout | Add commented htsworkflow.ini.example as documentation...
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commit | commitdiff | tree |
| 2009-03-09 |
Diane Trout | Sort by library id, not creation data closes [ticket...
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commit | commitdiff | tree |
| 2009-03-09 |
Diane Trout | Add flowcell notes field back to the admin page
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commit | commitdiff | tree |
| 2009-03-07 |
Diane Trout | flowcell model moved from samples to experiments, eland_conf...
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commit | commitdiff | tree |
| 2009-03-07 |
Diane Trout | The default django css pages wanted a few gifs, which...
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commit | commitdiff | tree |
| 2009-03-07 |
Diane Trout | Grab more of the admin css pages that were refering...
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commit | commitdiff | tree |
| 2009-03-07 |
Diane Trout | Display the pM on the public library detail page.
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commit | commitdiff | tree |
| 2009-03-07 |
Diane Trout | Allow filtering by the new hidden field on the library...
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commit | commitdiff | tree |
| 2009-03-07 |
Diane Trout | Lorian asked that the library size default to 225 when...
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commit | commitdiff | tree |
| 2009-03-06 |
Diane Trout | Make the public library browsing page support several...
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commit | commitdiff | tree |
| 2009-03-06 |
Diane Trout | Add another username to manage for our made_for to...
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commit | commitdiff | tree |
| 2009-03-04 |
Diane Trout | Add get_absolute_url to Library model and use it for...
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commit | commitdiff | tree |
| 2009-03-04 |
Diane Trout | Implement experiment type as a seperate table.
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commit | commitdiff | tree |
| 2009-03-04 |
Diane Trout | Change cluster_mac_id and seq_mac_id from text fields...
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commit | commitdiff | tree |
| 2009-03-04 |
Diane Trout | For one of our more recent libraries, the successful_pM...
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commit | commitdiff | tree |
| 2009-02-28 |
Diane Trout | Add a link to the public library summary page off from...
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commit | commitdiff | tree |
| 2009-02-27 |
Diane Trout | Add my script to convert Caltech's made_for field to...
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commit | commitdiff | tree |
| 2009-02-27 |
Diane Trout | Update some of Rami's GERALD config file generator...
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commit | commitdiff | tree |
| 2009-02-27 |
Diane Trout | Only configure logging if we're being run as a script
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commit | commitdiff | tree |
| 2009-02-26 |
Diane Trout | better handle the case when Affilations.contact is...
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commit | commitdiff | tree |
| 2009-02-26 |
Diane Trout | Remove a few more fields that we dont use, and change...
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commit | commitdiff | tree |
| 2009-02-24 |
Diane Trout | simplify library admin index view
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commit | commitdiff | tree |
| 2009-02-17 |
Diane Trout | Add script to convert current caltech v0.1.x database...
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commit | commitdiff | tree |
| 2009-02-17 |
Diane Trout | Merge flowcell 'paired_end' flag from v0.1 branch
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commit | commitdiff | tree |
| 2009-02-17 |
Diane Trout | remove cfg_defaults. It was part of an idea I was starting...
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commit | commitdiff | tree |
| 2009-02-13 |
Diane Trout | Reverse a mistake. DataRuns is from Rami and should...
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commit | commitdiff | tree |
| 2009-02-13 |
Diane Trout | enable sort of library view by descending library_id
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commit | commitdiff | tree |
| 2009-02-13 |
Diane Trout | save longer comment describing change
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commit | commitdiff | tree |
| 2009-02-13 |
Diane Trout | Aparently some more recent version of multi eland stopped
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commit | commitdiff | tree |
| 2009-02-13 |
Diane Trout | Merge in the library list, detail, and results downloading...
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commit | commitdiff | tree |
| 2009-02-13 |
Diane Trout | use the compression handling auto-opener for our eland...
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commit | commitdiff | tree |
| 2009-02-12 |
Diane Trout | make our API docstrings more epydoc friendly
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commit | commitdiff | tree |
| 2009-02-12 |
Diane Trout | Add load_pipeline_run_xml, a little function that feeds...
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commit | commitdiff | tree |
| 2009-02-05 |
Diane Trout | Drop 'using %s as cwd' down to just debug level.
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commit | commitdiff | tree |
| 2009-01-30 |
Diane Trout | extended command line configuration parsing and add...
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commit | commitdiff | tree |
| 2009-01-30 |
Diane Trout | Try to make runfolder results extraction more robust
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commit | commitdiff | tree |
| 2009-01-30 |
Diane Trout | Update to not hard code the config file name and the...
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commit | commitdiff | tree |
| 2009-01-24 |
Diane Trout | insert code to do ~ home directory expansion
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commit | commitdiff | tree |
| 2009-01-23 |
Diane Trout | Add in Rami's report template, and adjust the paths...
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commit | commitdiff | tree |
| 2009-01-23 |
Diane Trout | Add id as an AutoNumber(primary_key=True) field and...
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commit | commitdiff | tree |
| 2009-01-21 |
Diane Trout | Merge in Rami's changes from last friday.
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commit | commitdiff | tree |
| 2009-01-14 |
Diane Trout | add some testing code for the runner daemon
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commit | commitdiff | tree |
| 2009-01-14 |
Diane Trout | add empty admin.py for eland_config app
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commit | commitdiff | tree |
| 2009-01-14 |
Diane Trout | Merged much of the stanford htsworkflow frontend into...
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commit | commitdiff | tree |
| 2009-01-08 |
Diane Trout | This is a partial merge of the stanford branch with...
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commit | commitdiff | tree |
| 2009-01-06 |
Diane Trout | Look in Temp directories for some of the files we have...
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commit | commitdiff | tree |
| 2008-12-24 |
Diane Trout | Handle paired-end eland files.
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commit | commitdiff | tree |
| 2008-12-24 |
Diane Trout | remove a debug print statement
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commit | commitdiff | tree |
| 2008-12-24 |
Diane Trout | Add test cases for alphanum sort
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commit | commitdiff | tree |
| 2008-12-24 |
Diane Trout | Support sorting numbers along with the alphanumeric...
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commit | commitdiff | tree |
| 2008-12-23 |
Diane Trout | change from hand coded formatting functions to the...
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commit | commitdiff | tree |
| 2008-12-23 |
Diane Trout | Use the right URLError attribute names for error messages
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commit | commitdiff | tree |
| 2008-12-22 |
Diane Trout | update make-tree-library script with new default location
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commit | commitdiff | tree |
| 2008-12-22 |
Diane Trout | fix the multi-eland parser to strip off extensions...
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commit | commitdiff | tree |
| 2008-12-22 |
Diane Trout | clean up the logic for deciding the output filename...
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commit | commitdiff | tree |
| 2008-12-19 |
Diane Trout | Add command to report path to make figuring out which...
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commit | commitdiff | tree |
| 2008-12-18 |
Diane Trout | rename config file to something that doesn't include...
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commit | commitdiff | tree |
| 2008-12-10 |
Diane Trout | The summary parsing code now seems to handle paired...
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commit | commitdiff | tree |
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