Actually we want fastq files, not scarf files

diff --git a/htsworkflow/frontend/eland_config/views.py b/htsworkflow/frontend/eland_config/views.py
index 31b970f58b9b4f94e266a939f0a299ac3e849ac6..02b3f13607841ee27928b7ec5312809df3b74521 100644 (file)
--- a/htsworkflow/frontend/eland_config/views.py
+++ b/htsworkflow/frontend/eland_config/views.py
@@ -354,7 +354,7 @@ def getElandConfig(flowcell, regenerate=False):
     data.append('%s:ELAND_GENOME %s' % (lanes, '%%(%s)s' % (genome)))
     data.append('%s:USE_BASES %s' % (lanes, 'Y'*int(read_length)))
     
-  data.append('SEQUENCE_FORMAT --scarf')
+  data.append('SEQUENCE_FORMAT --fastq')
   
   data = '\n'.join(data)