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save longer comment describing change
author
Diane Trout
<diane@caltech.edu>
Fri, 13 Feb 2009 21:41:43 +0000
(21:41 +0000)
committer
Diane Trout
<diane@caltech.edu>
Fri, 13 Feb 2009 21:41:43 +0000
(21:41 +0000)
htsworkflow/pipelines/eland.py
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diff --git
a/htsworkflow/pipelines/eland.py
b/htsworkflow/pipelines/eland.py
index bdbe5758eb2ef59319d13151d169c91c9aacf04d..edd9036336f3972c52a222187c2884a42563c009 100644
(file)
--- a/
htsworkflow/pipelines/eland.py
+++ b/
htsworkflow/pipelines/eland.py
@@
-127,8
+127,10
@@
class ElandLane(object):
if groups is None:
match_codes[fields[2]] += 1
else:
- # when there are too many hit, eland writes a - where
- # it would have put the list of hits
+ # when there are too many hit, eland writes a - where
+ # it would have put the list of hits.
+ # or in a different version of eland, it just leaves
+ # that column blank, and only outputs 3 fields.
if len(fields) < 4 or fields[3] == '-':
continue
zero_mismatches = int(groups.group(1))