IPAR detection is more reliable than firecrest so do it first, and then

check for firecrest second

diff --git a/htsworkflow/pipelines/runfolder.py b/htsworkflow/pipelines/runfolder.py
index 6b953ce2f53c65760458559fae9c8e2e491d8794..5d663b3d9924890097cd4219b254fdf8339f0f9c 100644 (file)
--- a/htsworkflow/pipelines/runfolder.py
+++ b/htsworkflow/pipelines/runfolder.py
@@ -239,9 +239,9 @@ def get_specific_run(gerald_dir):
     logging.debug('gerald_dir: %s' % (gerald_dir,))
 
     # find our processed image dir
-    image_run = firecrest.firecrest(image_dir)
+    image_run = ipar.ipar(image_dir)
     if image_run is None:
-        image_run = ipar.ipar(image_dir)
+        image_run = firecrest.firecrest(image_dir)
     if image_run is None:
         msg = '%s does not contain an image processing step' % (image_dir,)
         logging.error(msg)