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The public library page needed to pass eland.genome_map to summarize_mapped_reads
author
Diane Trout
<diane@caltech.edu>
Tue, 10 Mar 2009 01:17:13 +0000
(
01:17
+0000)
committer
Diane Trout
<diane@caltech.edu>
Tue, 10 Mar 2009 01:17:13 +0000
(
01:17
+0000)
htsworkflow/frontend/samples/views.py
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diff --git
a/htsworkflow/frontend/samples/views.py
b/htsworkflow/frontend/samples/views.py
index 58bef9133b21d7d70f5dda5c7091e51fc202e884..b6561a624ed1b54c42a606a305cab1f081d05298 100644
(file)
--- a/
htsworkflow/frontend/samples/views.py
+++ b/
htsworkflow/frontend/samples/views.py
@@
-243,7
+243,7
@@
def _summary_stats(flowcell_id, lane_id):
eland_summary.flowcell_id = flowcell_id
eland_summary.clusters = gerald_summary[end][lane_id].cluster
eland_summary.cycle_width = cycle_width
- eland_summary.summarized_reads = runfolder.summarize_mapped_reads(eland_summary.mapped_reads)
+ eland_summary.summarized_reads = runfolder.summarize_mapped_reads(eland_summary.
genome_map, eland_summary.
mapped_reads)
# grab some more information out of the flowcell db
flowcell = FlowCell.objects.get(flowcell_id=fc_id)