django admin pages.
* Search bar
* Pagination
* Filters
This took grabbing the "ChangeSet" class from django.contrib.admin and
slightly modifying, in addition to the css files.
To provide the css files I had to add the ability to serve static
files from the app level. I followed the django pattern that the
internal static pages would only be served by django when debug is true.
And because it's hard to split it out, I also added a new field
'hidden' to the library table. This allows hiding libraries from
the public library page (which is useful since a number of libraries
have a gel isolate pair, which many end users find rather confusing).
"library_id" varchar(30) NOT NULL,
"library_name" varchar(100) NOT NULL UNIQUE,
"library_species_id" integer NOT NULL REFERENCES "samples_species" ("id"),
+ "hidden" bool NOT NULL,
"cell_line_id" integer NOT NULL REFERENCES "samples_cellline" ("id"),
"condition_id" integer NOT NULL REFERENCES "samples_condition" ("id"),
"antibody_id" integer NULL REFERENCES "samples_antibody" ("id"),
"avg_lib_size" integer NULL,
"notes" text NOT NULL);''')
c.execute('''INSERT INTO samples_library
- (id,library_id,library_name,library_species_id, experiment_type_id,
+ (id,library_id,library_name,library_species_id, hidden, experiment_type_id,
cell_line_id,condition_id,replicate,made_by,creation_date,
made_for,stopping_point,amplified_from_sample_id,
undiluted_concentration,ten_nM_dilution,successful_pM,
avg_lib_size,notes)
-select library_id,library_id,library_name,library_species_id, 1,
+select library_id,library_id,library_name,library_species_id, 0, 1,
1, 1, 1, made_by,creation_date,
made_for,stopping_point,amplified_from_sample_id,
undiluted_concentration,ten_nM_dilution,successful_pM,
0,notes from fctracker_library;''');
+
+ # mark gel isolates as "hidden"
+ c.execute('''update samples_library set hidden=1
+ where stopping_point = "1A" or stopping_point = "1Ab";''');
+
+ # get pk for RNA-seq experiment type
c.execute('select id from samples_experimenttype where name = "RNA-seq";')
rna_seq_id = list(c)[0]
+ # change everything marked as rnaseq to experiment_type rnaseq
c.execute('''update samples_library set experiment_type_id=? where library_id in (select library_id from fctracker_library where RNASeq = 1);''', rna_seq_id)
#c.execute('''drop table fctracker_library;''')
- # add many to many tables
+
+ # add affiliation linking table
c.execute('''CREATE TABLE "samples_library_affiliations" (
"id" integer NOT NULL PRIMARY KEY,
"library_id" integer NOT NULL REFERENCES "samples_library" ("id"),
"affiliation_id" integer NOT NULL REFERENCES "samples_affiliation" ("id"),
UNIQUE ("library_id", "affiliation_id"));''')
+ # add library to tags linking table
c.execute('''CREATE TABLE "samples_library_tags" (
"id" integer NOT NULL PRIMARY KEY,
"library_id" integer NOT NULL REFERENCES "samples_library" ("id"),
fieldsets = (
(None, {
'fields': (
- ('replicate','library_id','library_name'),
+ ('library_id','library_name','hidden'),
('library_species'),
- ('experiment_type'),
+ ('experiment_type', 'replicate'),
('cell_line','condition','antibody'),)
}),
('Creation Information:', {
--- /dev/null
+"""
+Slightly modified version of the django admin component that handles filters and searches
+"""
+from django.contrib.admin.filterspecs import FilterSpec
+from django.contrib.admin.options import IncorrectLookupParameters
+from django.core.paginator import Paginator, InvalidPage, EmptyPage
+from django.db import models
+from django.db.models.query import QuerySet
+from django.utils.encoding import smart_str
+from django.utils.http import urlencode
+
+import operator
+
+MAX_SHOW_ALL_ALLOWED = 20000
+
+#change list settings
+ALL_VAR = 'all'
+ORDER_VAR = 'o'
+ORDER_TYPE_VAR = 'ot'
+PAGE_VAR = 'p'
+SEARCH_VAR = 'q'
+IS_POPUP_VAR = 'pop'
+ERROR_FLAG = 'e'
+
+class ChangeList(object):
+ def __init__(self, request, model, list_filter, search_fields, list_per_page, queryset=None):
+ self.model = model
+ self.opts = model._meta
+ self.lookup_opts = self.opts
+ if queryset is None:
+ self.root_query_set = model.objects
+ else:
+ self.root_query_set = queryset
+ self.list_display = []
+ self.list_display_links = None
+ self.list_filter = list_filter
+
+ self.search_fields = search_fields
+ self.list_select_related = None
+ self.list_per_page = list_per_page
+ self.model_admin = None
+
+ try:
+ self.page_num = int(request.GET.get(PAGE_VAR,'0'))
+ except ValueError:
+ self.page_num = 0
+ self.show_all = 'all' in request.GET
+ self.params = dict(request.GET.items())
+ if PAGE_VAR in self.params:
+ del self.params[PAGE_VAR]
+ if ERROR_FLAG in self.params:
+ del self.params[ERROR_FLAG]
+
+ self.multi_page = True
+ self.can_show_all = False
+
+ self.order_field, self.order_type = self.get_ordering()
+ self.query = request.GET.get(SEARCH_VAR, '')
+ self.query_set = self.get_query_set()
+ self.get_results(request)
+ self.filter_specs, self.has_filters = self.get_filters(request)
+
+ #self.result_count = 'result count'
+ #self.full_result_count = 'full result count'
+
+ def get_filters(self, request):
+ filter_specs = []
+ if self.list_filter:
+ filter_fields = [self.lookup_opts.get_field(field_name) for field_name in self.list_filter]
+ for f in filter_fields:
+ spec = FilterSpec.create(f, request, self.params, self.model, self.model_admin)
+ if spec and spec.has_output():
+ filter_specs.append(spec)
+ return filter_specs, bool(filter_specs)
+
+ def get_query_string(self, new_params=None, remove=None):
+ if new_params is None: new_params = {}
+ if remove is None: remove = []
+ p = self.params.copy()
+ for r in remove:
+ for k in p.keys():
+ if k.startswith(r):
+ del p[k]
+ for k, v in new_params.items():
+ if v is None:
+ if k in p:
+ del p[k]
+ else:
+ p[k] = v
+ return '?%s' % urlencode(p)
+
+ def get_results(self, request):
+ paginator = Paginator(self.query_set, self.list_per_page)
+ # Get the number of objects, with admin filters applied.
+ result_count = paginator.count
+
+ # Get the total number of objects, with no admin filters applied.
+ # Perform a slight optimization: Check to see whether any filters were
+ # given. If not, use paginator.hits to calculate the number of objects,
+ # because we've already done paginator.hits and the value is cached.
+ if not self.query_set.query.where:
+ full_result_count = result_count
+ else:
+ full_result_count = self.root_query_set.count()
+
+ can_show_all = result_count <= MAX_SHOW_ALL_ALLOWED
+ multi_page = result_count > self.list_per_page
+
+ # Get the list of objects to display on this page.
+ if (self.show_all and can_show_all) or not multi_page:
+ result_list = list(self.query_set)
+ else:
+ try:
+ result_list = paginator.page(self.page_num+1).object_list
+ except InvalidPage:
+ result_list = ()
+
+ self.result_count = result_count
+ self.full_result_count = full_result_count
+ self.result_list = result_list
+ self.can_show_all = can_show_all
+ self.multi_page = multi_page
+ self.paginator = paginator
+
+ def get_ordering(self):
+ lookup_opts, params = self.lookup_opts, self.params
+ # For ordering, first check the "ordering" parameter in the admin
+ # options, then check the object's default ordering. If neither of
+ # those exist, order descending by ID by default. Finally, look for
+ # manually-specified ordering from the query string.
+ ordering = lookup_opts.ordering or ['-' + lookup_opts.pk.name]
+
+ if ordering[0].startswith('-'):
+ order_field, order_type = ordering[0][1:], 'desc'
+ else:
+ order_field, order_type = ordering[0], 'asc'
+ if ORDER_VAR in params:
+ try:
+ field_name = self.list_display[int(params[ORDER_VAR])]
+ try:
+ f = lookup_opts.get_field(field_name)
+ except models.FieldDoesNotExist:
+ # See whether field_name is a name of a non-field
+ # that allows sorting.
+ try:
+ if callable(field_name):
+ attr = field_name
+ elif hasattr(self.model_admin, field_name):
+ attr = getattr(self.model_admin, field_name)
+ else:
+ attr = getattr(self.model, field_name)
+ order_field = attr.admin_order_field
+ except AttributeError:
+ pass
+ else:
+ order_field = f.name
+ except (IndexError, ValueError):
+ pass # Invalid ordering specified. Just use the default.
+ if ORDER_TYPE_VAR in params and params[ORDER_TYPE_VAR] in ('asc', 'desc'):
+ order_type = params[ORDER_TYPE_VAR]
+ return order_field, order_type
+
+ def get_query_set(self):
+ qs = self.root_query_set
+ lookup_params = self.params.copy() # a dictionary of the query string
+ for i in (ALL_VAR, ORDER_VAR, ORDER_TYPE_VAR, SEARCH_VAR, IS_POPUP_VAR):
+ if i in lookup_params:
+ del lookup_params[i]
+ for key, value in lookup_params.items():
+ if not isinstance(key, str):
+ # 'key' will be used as a keyword argument later, so Python
+ # requires it to be a string.
+ del lookup_params[key]
+ lookup_params[smart_str(key)] = value
+
+ # if key ends with __in, split parameter into separate values
+ if key.endswith('__in'):
+ lookup_params[key] = value.split(',')
+
+ # Apply lookup parameters from the query string.
+ try:
+ qs = qs.filter(**lookup_params)
+ # Naked except! Because we don't have any other way of validating "params".
+ # They might be invalid if the keyword arguments are incorrect, or if the
+ # values are not in the correct type, so we might get FieldError, ValueError,
+ # ValicationError, or ? from a custom field that raises yet something else
+ # when handed impossible data.
+ except Exception, e:
+ print e
+ raise IncorrectLookupParameters
+
+ # Use select_related() if one of the list_display options is a field
+ # with a relationship.
+ if self.list_select_related:
+ qs = qs.select_related()
+ else:
+ for field_name in self.list_display:
+ try:
+ f = self.lookup_opts.get_field(field_name)
+ except models.FieldDoesNotExist:
+ pass
+ else:
+ if isinstance(f.rel, models.ManyToOneRel):
+ qs = qs.select_related()
+ break
+
+ # Set ordering.
+ if self.order_field:
+ qs = qs.order_by('%s%s' % ((self.order_type == 'desc' and '-' or ''), self.order_field))
+
+ # Apply keyword searches.
+ def construct_search(field_name):
+ if field_name.startswith('^'):
+ return "%s__istartswith" % field_name[1:]
+ elif field_name.startswith('='):
+ return "%s__iexact" % field_name[1:]
+ elif field_name.startswith('@'):
+ return "%s__search" % field_name[1:]
+ else:
+ return "%s__icontains" % field_name
+
+ if self.search_fields and self.query:
+ for bit in self.query.split():
+ or_queries = [models.Q(**{construct_search(field_name): bit}) for field_name in self.search_fields]
+ other_qs = QuerySet(self.model)
+ other_qs.dup_select_related(qs)
+ other_qs = other_qs.filter(reduce(operator.or_, or_queries))
+ qs = qs & other_qs
+ for field_name in self.search_fields:
+ if '__' in field_name:
+ qs = qs.distinct()
+ break
+
+ if self.opts.one_to_one_field:
+ qs = qs.complex_filter(self.opts.one_to_one_field.rel.limit_choices_to)
+
+ return qs
+
+
library_id = models.CharField(max_length=30, db_index=True)
library_name = models.CharField(max_length=100, unique=True)
library_species = models.ForeignKey(Species)
+ # new field 2008 Mar 5, alter table samples_library add column "hidden" NOT NULL default 0;
+ hidden = models.BooleanField()
cell_line = models.ForeignKey(Cellline)
condition = models.ForeignKey(Condition)
antibody = models.ForeignKey(Antibody,blank=True,null=True)
# Create your views here.
+from htsworkflow.frontend.samples.changelist import ChangeList
from htsworkflow.frontend.samples.models import Library
from htsworkflow.frontend.samples.results import get_flowcell_result_dict, parse_flowcell_id
from htsworkflow.pipelines.runfolder import load_pipeline_run_xml
from htsworkflow.util import opener
from django.http import HttpResponse
+from django.template import RequestContext
from django.template.loader import get_template
-from django.template import Context
import StringIO
import logging
LANE_LIST = [1,2,3,4,5,6,7,8]
-def create_library_list():
+def create_library_context(cl):
"""
Create a list of libraries that includes how many lanes were run
"""
- library_list = []
- for lib in Library.objects.order_by('-library_id'):
+ records = []
+ #for lib in library_items.object_list:
+ for lib in cl.result_list:
summary = {}
summary['library_id'] = lib.library_id
summary['library_name'] = lib.library_name
lane = getattr(lib, 'lane_%d_library' % (lane_id,))
lanes_run += len( lane.all() )
summary['lanes_run'] = lanes_run
- library_list.append(summary)
- return library_list
+ records.append(summary)
+ cl.result_count = unicode(cl.paginator._count) + u" libraries"
+ return {'library_list': records }
def library(request):
- library_list = create_library_list()
+ # build changelist
+ fcl = ChangeList(request, Library,
+ list_filter=['library_species','affiliations'],
+ search_fields=['library_id', 'library_name'],
+ list_per_page=25,
+ queryset=Library.objects.filter(hidden__exact=0)
+ )
+
+ context = { 'cl': fcl}
+ context.update(create_library_context(fcl))
t = get_template('samples/library_index.html')
- c = Context({'library_list': library_list })
+ c = RequestContext(request, context)
return HttpResponse( t.render(c) )
def library_to_flowcells(request, lib_id):
output.append(err)
output.append('<br />')
- output.append(t.render(Context({'lane_summary_list': lane_summary_list})))
+ output.append(t.render(RequestContext(request, {'lane_summary_list': lane_summary_list})))
output.append('<br />')
if record_count == 0:
# Absolute path to the directory that holds media.
# Example: "/home/media/media.lawrence.com/"
-MEDIA_ROOT = ''
+MEDIA_ROOT = os.path.abspath(os.path.split(__file__)[0]) + '/static/'
# URL that handles the media served from MEDIA_ROOT.
# Example: "http://media.lawrence.com"
-MEDIA_URL = ''
+MEDIA_URL = '/static/'
# URL prefix for admin media -- CSS, JavaScript and images. Make sure to use a
# trailing slash.
# Project specific settings
-ALLOWED_IPS={'localhost': '127.0.0.1'}
+ALLOWED_IPS={'127.0.0.1': '127.0.0.1'}
options_to_dict(ALLOWED_IPS, 'allowed_hosts')
-ALLOWED_ANALYS_IPS = {'localhost': '127.0.0.1'}
+ALLOWED_ANALYS_IPS = {'127.0.0.1': '127.0.0.1'}
options_to_dict(ALLOWED_ANALYS_IPS, 'allowed_analysis_hosts')
#UPLOADTO_HOME = os.path.abspath('../../uploads')
#UPLOADTO_CONFIG_FILE = os.path.join(UPLOADTO_HOME, 'eland_config')
#UPLOADTO_ELAND_RESULT_PACKS = os.path.join(UPLOADTO_HOME, 'eland_results')
#UPLOADTO_BED_PACKS = os.path.join(UPLOADTO_HOME, 'bed_packs')
+RESULT_HOME_DIR='/Users/diane/proj/solexa/results/flowcells'
--- /dev/null
+/*
+ DJANGO Admin
+ by Wilson Miner wilson@lawrence.com
+*/
+
+/* Block IE 5 */
+@import "null.css?\"\{";
+
+/* Import other styles */
+@import url('global.css');
+@import url('layout.css');
+
+/* Import patch for IE 6 Windows */
+/*\*/ @import "patch-iewin.css"; /**/
--- /dev/null
+@import url('base.css');
+
+/* CHANGELISTS */
+#changelist { position:relative; width:100%; }
+#changelist table { width:100%; }
+.change-list .filtered table { border-right:1px solid #ddd; }
+.change-list .filtered { min-height:400px; }
+.change-list .filtered { background:white url(../img/admin/changelist-bg.gif) top right repeat-y !important; }
+.change-list .filtered table, .change-list .filtered .paginator, .filtered #toolbar, .filtered div.xfull { margin-right:160px !important; width:auto !important; }
+.change-list .filtered table tbody th { padding-right:1em; }
+#changelist .toplinks { border-bottom:1px solid #ccc !important; }
+#changelist .paginator { color:#666; border-top:1px solid #eee; border-bottom:1px solid #eee; background:white url(../img/admin/nav-bg.gif) 0 180% repeat-x; overflow:hidden; }
+.change-list .filtered .paginator { border-right:1px solid #ddd; }
+
+/* CHANGELIST TABLES */
+#changelist table thead th { white-space:nowrap; }
+#changelist table tbody td { border-left: 1px solid #ddd; }
+#changelist table tfoot { color: #666; }
+
+/* TOOLBAR */
+#changelist #toolbar { padding:3px; border-bottom:1px solid #ddd; background:#e1e1e1 url(../img/admin/nav-bg.gif) top left repeat-x; color:#666; }
+#changelist #toolbar form input { font-size:11px; padding:1px 2px; }
+#changelist #toolbar form #searchbar { padding:2px; }
+#changelist #changelist-search img { vertical-align:middle; }
+
+/* FILTER COLUMN */
+#changelist-filter { position:absolute; top:0; right:0; z-index:1000; width:160px; border-left:1px solid #ddd; background:#efefef; margin:0; }
+#changelist-filter h2 { font-size:11px; padding:2px 5px; border-bottom:1px solid #ddd; }
+#changelist-filter h3 { font-size:12px; margin-bottom:0; }
+#changelist-filter ul { padding-left:0;margin-left:10px; }
+#changelist-filter li { list-style-type:none; margin-left:0; padding-left:0; }
+#changelist-filter a { color:#999; }
+#changelist-filter a:hover { color:#036; }
+#changelist-filter li.selected { border-left:5px solid #ccc; padding-left:5px;margin-left:-10px; }
+#changelist-filter li.selected a { color:#5b80b2 !important; }
+
+/* DATE DRILLDOWN */
+.change-list ul.toplinks { display:block; background:white url(../img/admin/nav-bg-reverse.gif) 0 -10px repeat-x; border-top:1px solid white; float:left; padding:0 !important; margin:0 !important; width:100%; }
+.change-list ul.toplinks li { float: left; width: 9em; padding:3px 6px; font-weight: bold; list-style-type:none; }
+.change-list ul.toplinks .date-back a { color:#999; }
+.change-list ul.toplinks .date-back a:hover { color:#036; }
+
+/* PAGINATOR */
+.paginator { font-size:11px; padding-top:10px; padding-bottom:10px; line-height:22px; margin:0; border-top:1px solid #ddd; }
+.paginator a:link, .paginator a:visited { padding:2px 6px; border:solid 1px #ccc; background:white; text-decoration:none; }
+.paginator a.showall { padding:0 !important; border:none !important; }
+.paginator a.showall:hover { color:#036 !important; background:transparent !important; }
+.paginator .end { border-width:2px !important; margin-right:6px; }
+.paginator .this-page { padding:2px 6px; font-weight:bold; font-size:13px; vertical-align:top; }
+.paginator a:hover { color:white; background:#5b80b2; border-color:#036; }
--- /dev/null
+table, td {
+ border-style: solid;
+}
+table {
+ border-width: 0 0 1px 1px;
+ border-spacing: 0;
+ border-collapse: collapse;
+}
+thead {
+ text-align: center;
+}
+td {
+ margin: 0;
+ padding: 4px;
+ border-width: 1px 1px 0 0;
+}
+td a {
+ display: block;
+}
--- /dev/null
+body { margin:0; padding:0; font-size:12px; font-family:"Lucida Grande","DejaVu Sans","Bitstream Vera Sans",Verdana,Arial,sans-serif; color:#333; background:#fff; }
+
+/* LINKS */
+a:link, a:visited { color: #5b80b2; text-decoration:none; }
+a:hover { color: #036; }
+a img { border:none; }
+a.section:link, a.section:visited { color: white; text-decoration:none; }
+
+/* GLOBAL DEFAULTS */
+p, ol, ul, dl { margin:.2em 0 .8em 0; }
+p { padding:0; line-height:140%; }
+
+h1,h2,h3,h4,h5 { font-weight:bold; }
+h1 { font-size:18px; color:#666; padding:0 6px 0 0; margin:0 0 .2em 0; }
+h2 { font-size:16px; margin:1em 0 .5em 0; }
+h2.subhead { font-weight:normal;margin-top:0; }
+h3 { font-size:14px; margin:.8em 0 .3em 0; color:#666; font-weight:bold; }
+h4 { font-size:12px; margin:1em 0 .8em 0; padding-bottom:3px; }
+h5 { font-size:10px; margin:1.5em 0 .5em 0; color:#666; text-transform:uppercase; letter-spacing:1px; }
+
+ul li { list-style-type:square; padding:1px 0; }
+ul.plainlist { margin-left:0 !important; }
+ul.plainlist li { list-style-type:none; }
+li ul { margin-bottom:0; }
+li, dt, dd { font-size:11px; line-height:14px; }
+dt { font-weight:bold; margin-top:4px; }
+dd { margin-left:0; }
+
+form { margin:0; padding:0; }
+fieldset { margin:0; padding:0; }
+
+blockquote { font-size:11px; color:#777; margin-left:2px; padding-left:10px; border-left:5px solid #ddd; }
+code, pre { font-family:"Bitstream Vera Sans Mono", Monaco, "Courier New", Courier, monospace; background:inherit; color:#666; font-size:11px; }
+pre.literal-block { margin:10px; background:#eee; padding:6px 8px; }
+code strong { color:#930; }
+hr { clear:both; color:#eee; background-color:#eee; height:1px; border:none; margin:0; padding:0; font-size:1px; line-height:1px; }
+
+/* TEXT STYLES & MODIFIERS */
+.small { font-size:11px; }
+.tiny { font-size:10px; }
+p.tiny { margin-top:-2px; }
+.mini { font-size:9px; }
+p.mini { margin-top:-3px; }
+.help, p.help { font-size:10px !important; color:#999; }
+p img, h1 img, h2 img, h3 img, h4 img, td img { vertical-align:middle; }
+.quiet, a.quiet:link, a.quiet:visited { color:#999 !important;font-weight:normal !important; }
+.quiet strong { font-weight:bold !important; }
+.float-right { float:right; }
+.float-left { float:left; }
+.clear { clear:both; }
+.align-left { text-align:left; }
+.align-right { text-align:right; }
+.example { margin:10px 0; padding:5px 10px; background:#efefef; }
+.nowrap { white-space:nowrap; }
+
+/* TABLES */
+table { border-collapse:collapse; border-color:#ccc; }
+td, th { font-size:11px; line-height:13px; border-bottom:1px solid #eee; vertical-align:top; padding:5px; font-family:"Lucida Grande", Verdana, Arial, sans-serif; }
+th { text-align:left; font-size:12px; font-weight:bold; }
+thead th,
+tfoot td { color:#666; padding:2px 5px; font-size:11px; background:#e1e1e1 url(../img/admin/nav-bg.gif) top left repeat-x; border-left:1px solid #ddd; border-bottom:1px solid #ddd; }
+tfoot td { border-bottom:none; border-top:1px solid #ddd; }
+thead th:first-child,
+tfoot td:first-child { border-left:none !important; }
+thead th.optional { font-weight:normal !important; }
+fieldset table { border-right:1px solid #eee; }
+tr.row-label td { font-size:9px; padding-top:2px; padding-bottom:0; border-bottom:none; color:#666; margin-top:-1px; }
+tr.alt { background:#f6f6f6; }
+.row1 { background:#EDF3FE; }
+.row2 { background:white; }
+
+/* SORTABLE TABLES */
+thead th a:link, thead th a:visited { color:#666; display:block; }
+table thead th.sorted { background-position:bottom left !important; }
+table thead th.sorted a { padding-right:13px; }
+table thead th.ascending a { background:url(../img/admin/arrow-down.gif) right .4em no-repeat; }
+table thead th.descending a { background:url(../img/admin/arrow-up.gif) right .4em no-repeat; }
+
+/* ORDERABLE TABLES */
+table.orderable tbody tr td:hover { cursor:move; }
+table.orderable tbody tr td:first-child { padding-left:14px; background-image:url(../img/admin/nav-bg-grabber.gif); background-repeat:repeat-y; }
+table.orderable-initalized .order-cell, body>tr>td.order-cell { display:none; }
+
+/* FORM DEFAULTS */
+input, textarea, select { margin:2px 0; padding:2px 3px; vertical-align:middle; font-family:"Lucida Grande", Verdana, Arial, sans-serif; font-weight:normal; font-size:11px; }
+textarea { vertical-align:top !important; }
+input[type=text], input[type=password], textarea, select, .vTextField { border:1px solid #ccc; }
+
+/* FORM BUTTONS */
+.button, input[type=submit], input[type=button], .submit-row input { background:white url(../img/admin/nav-bg.gif) bottom repeat-x; padding:3px; color:black; border:1px solid #bbb; border-color:#ddd #aaa #aaa #ddd; }
+.button:active, input[type=submit]:active, input[type=button]:active { background-image:url(../img/admin/nav-bg-reverse.gif); background-position:top; }
+.button.default, input[type=submit].default, .submit-row input.default { border:2px solid #5b80b2; background:#7CA0C7 url(../img/admin/default-bg.gif) bottom repeat-x; font-weight:bold; color:white; float:right; }
+.button.default:active, input[type=submit].default:active { background-image:url(../img/admin/default-bg-reverse.gif); background-position:top; }
+
+/* MODULES */
+.module { border:1px solid #ccc; margin-bottom:5px; background:white; }
+.module p, .module ul, .module h3, .module h4, .module dl, .module pre { padding-left:10px; padding-right:10px; }
+.module blockquote { margin-left:12px; }
+.module ul, .module ol { margin-left:1.5em; }
+.module h3 { margin-top:.6em; }
+.module h2, .module caption, .inline-group h2 { margin:0; padding:2px 5px 3px 5px; font-size:11px; text-align:left; font-weight:bold; background:#7CA0C7 url(../img/admin/default-bg.gif) top left repeat-x; color:white; }
+.module table { border-collapse: collapse; }
+
+/* MESSAGES & ERRORS */
+ul.messagelist { padding:0 0 5px 0; margin:0; }
+ul.messagelist li { font-size:12px; display:block; padding:4px 5px 4px 25px; margin:0 0 3px 0; border-bottom:1px solid #ddd; color:#666; background:#ffc url(../img/admin/icon_success.gif) 5px .3em no-repeat; }
+.errornote { font-size:12px !important; display:block; padding:4px 5px 4px 25px; margin:0 0 3px 0; border:1px solid red; color:red;background:#ffc url(../img/admin/icon_error.gif) 5px .3em no-repeat; }
+ul.errorlist { margin:0 !important; padding:0 !important; }
+.errorlist li { font-size:12px !important; display:block; padding:4px 5px 4px 25px; margin:0 0 3px 0; border:1px solid red; color:white; background:red url(../img/admin/icon_alert.gif) 5px .3em no-repeat; }
+td ul.errorlist { margin:0 !important; padding:0 !important; }
+td ul.errorlist li { margin:0 !important; }
+.errors { background:#ffc; }
+.errors input, .errors select { border:1px solid red; }
+div.system-message { background: #ffc; margin: 10px; padding: 6px 8px; font-size: .8em; }
+div.system-message p.system-message-title { padding:4px 5px 4px 25px; margin:0; color:red; background:#ffc url(../img/admin/icon_error.gif) 5px .3em no-repeat; }
+.description { font-size:12px; padding:5px 0 0 12px; }
+
+/* BREADCRUMBS */
+div.breadcrumbs { background:white url(../img/admin/nav-bg-reverse.gif) 0 -10px repeat-x; padding:2px 8px 3px 8px; font-size:11px; color:#999; border-top:1px solid white; border-bottom:1px solid #ccc; text-align:left; }
+
+/* ACTION ICONS */
+.addlink { padding-left:12px; background:url(../img/admin/icon_addlink.gif) 0 .2em no-repeat; }
+.changelink { padding-left:12px; background:url(../img/admin/icon_changelink.gif) 0 .2em no-repeat; }
+.deletelink { padding-left:12px; background:url(../img/admin/icon_deletelink.gif) 0 .25em no-repeat; }
+a.deletelink:link, a.deletelink:visited { color:#CC3434; }
+a.deletelink:hover { color:#993333; }
+
+/* OBJECT TOOLS */
+.object-tools { font-size:10px; font-weight:bold; font-family:Arial,Helvetica,sans-serif; padding-left:0; float:right; position:relative; margin-top:-2.4em; margin-bottom:-2em; }
+.form-row .object-tools { margin-top:5px; margin-bottom:5px; float:none; height:2em; padding-left:3.5em; }
+.object-tools li { display:block; float:left; background:url(../img/admin/tool-left.gif) 0 0 no-repeat; padding:0 0 0 8px; margin-left:2px; height:16px; }
+.object-tools li:hover { background:url(../img/admin/tool-left_over.gif) 0 0 no-repeat; }
+.object-tools a:link, .object-tools a:visited { display:block; float:left; color:white; padding:.1em 14px .1em 8px; height:14px; background:#999 url(../img/admin/tool-right.gif) 100% 0 no-repeat; }
+.object-tools a:hover, .object-tools li:hover a { background:#5b80b2 url(../img/admin/tool-right_over.gif) 100% 0 no-repeat; }
+.object-tools a.viewsitelink, .object-tools a.golink { background:#999 url(../img/admin/tooltag-arrowright.gif) top right no-repeat; padding-right:28px; }
+.object-tools a.viewsitelink:hover, .object-tools a.golink:hover { background:#5b80b2 url(../img/admin/tooltag-arrowright_over.gif) top right no-repeat; }
+.object-tools a.addlink { background:#999 url(../img/admin/tooltag-add.gif) top right no-repeat; padding-right:28px; }
+.object-tools a.addlink:hover { background:#5b80b2 url(../img/admin/tooltag-add_over.gif) top right no-repeat; }
+
+/* OBJECT HISTORY */
+table#change-history { width:100%; }
+table#change-history tbody th { width:16em; }
--- /dev/null
+/* PAGE STRUCTURE */
+#container { position:relative; width:100%; min-width:760px; padding:0; }
+#content { margin:10px 15px; }
+#header { width:100%; }
+#content-main { float:left; width:100%; }
+#content-related { float:right; width:18em; position:relative; margin-right:-19em; }
+#footer { clear:both; padding:10px; }
+
+/* COLUMN TYPES */
+.colMS { margin-right:20em !important; }
+.colSM { margin-left:20em !important; }
+.colSM #content-related { float:left; margin-right:0; margin-left:-19em; }
+.colSM #content-main { float:right; }
+.popup .colM { width:95%; }
+.subcol { float:left; width:46%; margin-right:15px; }
+.dashboard #content { width:500px; }
+
+/* HEADER */
+#header { background:#417690; color:#ffc; overflow:hidden; }
+#header a:link, #header a:visited { color:white; }
+#header a:hover { text-decoration:underline; }
+#branding h1 { padding:0 10px; font-size:18px; margin:8px 0; font-weight:normal; color:#f4f379; }
+#branding h2 { padding:0 10px; font-size:14px; margin:-8px 0 8px 0; font-weight:normal; color:#ffc; }
+#user-tools { position:absolute; top:0; right:0; padding:1.2em 10px; font-size:11px; text-align:right; }
+
+/* SIDEBAR */
+#content-related h3 { font-size:12px; color:#666; margin-bottom:3px; }
+#content-related h4 { font-size:11px; }
+#content-related .module h2 { background:#eee url(../img/admin/nav-bg.gif) bottom left repeat-x; color:#666; }
\ No newline at end of file
-<style type="text/css">
- /* <![CDATA[ */
- table, td {
- border-style: solid;
- }
- table {
- border-width: 0 0 1px 1px;
- border-spacing: 0;
- border-collapse: collapse;
- }
- thead {
- text-align: center;
- }
- td {
- margin: 0;
- padding: 4px;
- border-width: 1px 1px 0 0;
- }
- td a {
- display: block;
- }
- /* ]]> */
-</style>
+{% load i18n %}
+{% load admin_list %}
+
+<link rel="stylesheet" type="text/css" href="{{ MEDIA_URL}}css/changelists.css" />
+<link rel="stylesheet" type="text/css" href="{{ MEDIA_URL}}css/click-table.css" />
+
+<div id="content" class="flex>
+ <form action="" method="get">
+ {% block search %}{% search_form cl %}{% endblock %}
+ {% block pagination %}{% pagination cl %}{% endblock %}
+ </form>
+ {% block filters %}
+ {% if cl.has_filters %}
+ <div id="changelist-filter">
+ <h2>{% trans 'Filter' %}</h2>
+ {% for spec in cl.filter_specs %}
+ {% admin_list_filter cl spec %}
+ {% endfor %}
+ </div>
+ {% endif %}
+ {% endblock %}
{% block summary_stats %}
<table>
{% endfor %}
</tbody>
</table>
+</div>
{% endblock %}
#databrowse.site.register(Library)
#databrowse.site.register(FlowCell)
+from htsworkflow.frontend import settings
+
urlpatterns = patterns('',
# Base:
(r'^eland_config/', include('htsworkflow.frontend.eland_config.urls')),
# databrowser
#(r'^databrowse/(.*)', databrowse.site.root)
)
+
+if settings.DEBUG:
+ urlpatterns += patterns('',
+ (r'^static/(?P<path>.*)$', 'django.views.static.serve',
+ {'document_root': settings.MEDIA_ROOT}),
+ )
projects / htsworkflow.git / commitdiff
