| 2009-03-06 |
Diane Trout | Make the public library browsing page support several...
|
commit | commitdiff | tree |
| 2009-03-06 |
Diane Trout | Add another username to manage for our made_for to...
|
commit | commitdiff | tree |
| 2009-03-04 |
Diane Trout | Add get_absolute_url to Library model and use it for...
|
commit | commitdiff | tree |
| 2009-03-04 |
Diane Trout | Implement experiment type as a seperate table.
|
commit | commitdiff | tree |
| 2009-03-04 |
Diane Trout | Change cluster_mac_id and seq_mac_id from text fields...
|
commit | commitdiff | tree |
| 2009-03-04 |
Diane Trout | For one of our more recent libraries, the successful_pM...
|
commit | commitdiff | tree |
| 2009-02-28 |
Diane Trout | Add a link to the public library summary page off from...
|
commit | commitdiff | tree |
| 2009-02-27 |
Diane Trout | Add my script to convert Caltech's made_for field to...
|
commit | commitdiff | tree |
| 2009-02-27 |
Diane Trout | Update some of Rami's GERALD config file generator...
|
commit | commitdiff | tree |
| 2009-02-27 |
Diane Trout | Only configure logging if we're being run as a script
|
commit | commitdiff | tree |
| 2009-02-26 |
Diane Trout | better handle the case when Affilations.contact is...
|
commit | commitdiff | tree |
| 2009-02-26 |
Diane Trout | Remove a few more fields that we dont use, and change...
|
commit | commitdiff | tree |
| 2009-02-24 |
Diane Trout | simplify library admin index view
|
commit | commitdiff | tree |
| 2009-02-17 |
Diane Trout | Add script to convert current caltech v0.1.x database...
|
commit | commitdiff | tree |
| 2009-02-17 |
Diane Trout | Merge flowcell 'paired_end' flag from v0.1 branch
|
commit | commitdiff | tree |
| 2009-02-17 |
Diane Trout | remove cfg_defaults. It was part of an idea I was starting...
|
commit | commitdiff | tree |
| 2009-02-13 |
Diane Trout | Reverse a mistake. DataRuns is from Rami and should...
|
commit | commitdiff | tree |
| 2009-02-13 |
Diane Trout | enable sort of library view by descending library_id
|
commit | commitdiff | tree |
| 2009-02-13 |
Diane Trout | save longer comment describing change
|
commit | commitdiff | tree |
| 2009-02-13 |
Diane Trout | Aparently some more recent version of multi eland stopped
|
commit | commitdiff | tree |
| 2009-02-13 |
Diane Trout | Merge in the library list, detail, and results downloading...
|
commit | commitdiff | tree |
| 2009-02-13 |
Diane Trout | use the compression handling auto-opener for our eland...
|
commit | commitdiff | tree |
| 2009-02-12 |
Diane Trout | make our API docstrings more epydoc friendly
|
commit | commitdiff | tree |
| 2009-02-12 |
Diane Trout | Add load_pipeline_run_xml, a little function that feeds...
|
commit | commitdiff | tree |
| 2009-02-05 |
Diane Trout | Drop 'using %s as cwd' down to just debug level.
|
commit | commitdiff | tree |
| 2009-01-30 |
Diane Trout | extended command line configuration parsing and add...
|
commit | commitdiff | tree |
| 2009-01-30 |
Diane Trout | Try to make runfolder results extraction more robust
|
commit | commitdiff | tree |
| 2009-01-30 |
Diane Trout | Update to not hard code the config file name and the...
|
commit | commitdiff | tree |
| 2009-01-24 |
Diane Trout | insert code to do ~ home directory expansion
|
commit | commitdiff | tree |
| 2009-01-23 |
Diane Trout | Add in Rami's report template, and adjust the paths...
|
commit | commitdiff | tree |
| 2009-01-23 |
Diane Trout | Add id as an AutoNumber(primary_key=True) field and...
|
commit | commitdiff | tree |
| 2009-01-21 |
Diane Trout | Merge in Rami's changes from last friday.
|
commit | commitdiff | tree |
| 2009-01-14 |
Diane Trout | add some testing code for the runner daemon
|
commit | commitdiff | tree |
| 2009-01-14 |
Diane Trout | add empty admin.py for eland_config app
|
commit | commitdiff | tree |
| 2009-01-14 |
Diane Trout | Merged much of the stanford htsworkflow frontend into...
|
commit | commitdiff | tree |
| 2009-01-08 |
Diane Trout | This is a partial merge of the stanford branch with...
|
commit | commitdiff | tree |
| 2009-01-06 |
Diane Trout | Look in Temp directories for some of the files we have...
|
commit | commitdiff | tree |
| 2008-12-24 |
Diane Trout | Handle paired-end eland files.
|
commit | commitdiff | tree |
| 2008-12-24 |
Diane Trout | remove a debug print statement
|
commit | commitdiff | tree |
| 2008-12-24 |
Diane Trout | Add test cases for alphanum sort
|
commit | commitdiff | tree |
| 2008-12-24 |
Diane Trout | Support sorting numbers along with the alphanumeric...
|
commit | commitdiff | tree |
| 2008-12-23 |
Diane Trout | change from hand coded formatting functions to the...
|
commit | commitdiff | tree |
| 2008-12-23 |
Diane Trout | Use the right URLError attribute names for error messages
|
commit | commitdiff | tree |
| 2008-12-22 |
Diane Trout | update make-tree-library script with new default location
|
commit | commitdiff | tree |
| 2008-12-22 |
Diane Trout | fix the multi-eland parser to strip off extensions...
|
commit | commitdiff | tree |
| 2008-12-22 |
Diane Trout | clean up the logic for deciding the output filename...
|
commit | commitdiff | tree |
| 2008-12-19 |
Diane Trout | Add command to report path to make figuring out which...
|
commit | commitdiff | tree |
| 2008-12-18 |
Diane Trout | rename config file to something that doesn't include...
|
commit | commitdiff | tree |
| 2008-12-10 |
Diane Trout | The summary parsing code now seems to handle paired...
|
commit | commitdiff | tree |
| 2008-12-09 |
Diane Trout | Test 1.1rc1 style runs, which unfortunately require...
|
commit | commitdiff | tree |
| 2008-12-03 |
Diane Trout | make-library-tree is a tool to maintain caltech's version...
|
commit | commitdiff | tree |
| 2008-12-03 |
Diane Trout | Add test code to see if runfolder can handle something...
|
commit | commitdiff | tree |
| 2008-12-03 |
Diane Trout | Add code to create a paired end Summary.htm file
|
commit | commitdiff | tree |
| 2008-12-03 |
Diane Trout | Store the bustard pathname when searching for run folders
|
commit | commitdiff | tree |
| 2008-11-21 |
Diane Trout | Use the get_runs from htsworkflow.pipelines.runfolder
|
commit | commitdiff | tree |
| 2008-11-14 |
Diane Trout | Forgot to change a import htsworkflow.pipeline to htsworflow...
|
commit | commitdiff | tree |
| 2008-11-06 |
Diane Trout | Updated ipar_100 test case to deal with the using U0...
|
commit | commitdiff | tree |
| 2008-11-06 |
Diane Trout | Process eland extended (or multi) read files.
|
commit | commitdiff | tree |
| 2008-10-30 |
Diane Trout | The htsworkflow.pipelines.gerald module was getting...
|
commit | commitdiff | tree |
| 2008-10-30 |
Diane Trout | Add support for scanning for results in the IPAR directory.
|
commit | commitdiff | tree |
| 2008-10-30 |
Diane Trout | Add "_slow" to the end of the queuecommand test functions
|
commit | commitdiff | tree |
| 2008-10-28 |
Diane Trout | update setup.py for some package renames and some missing...
|
commit | commitdiff | tree |
| 2008-10-21 |
Diane Trout | Merge in new modules from htsworkflow branch.
|
commit | commitdiff | tree |
| 2008-10-21 |
Diane Trout | Merge in model changes to fctracker from htsworkflow...
|
commit | commitdiff | tree |
| 2008-10-21 |
Diane Trout | update scripts for the pipeline to pipelines module...
|
commit | commitdiff | tree |
| 2008-10-15 |
Diane Trout | rename pipeline to pipelines to imply that we can process...
|
commit | commitdiff | tree |
| 2008-10-15 |
Diane Trout | Rename trunk from gaworkflow to htsworkflow (and update...
|
commit | commitdiff | tree |
| 2008-09-25 |
Diane Trout | solexa2srf likes to produce output, so my trick of...
|
commit | commitdiff | tree |
| 2008-09-25 |
Diane Trout | use _ for field seperator in srf file names. (Using...
|
commit | commitdiff | tree |
| 2008-09-18 |
Diane Trout | Use queuecommands.run not queuecommands.start_job to...
|
commit | commitdiff | tree |
| 2008-09-18 |
Diane Trout | Be a little more informative about how many process...
|
commit | commitdiff | tree |
| 2008-09-05 |
Diane Trout | extract status field out of flowcell name.
|
commit | commitdiff | tree |
| 2008-08-29 |
Diane Trout | Add support for converting mutli-eland files from pipeline...
|
commit | commitdiff | tree |
| 2008-08-29 |
Diane Trout | insert stub clean_runs function to list roughly what...
|
commit | commitdiff | tree |
| 2008-08-15 |
Diane Trout | Improve code to extract runfolder name from the path...
|
commit | commitdiff | tree |
| 2008-08-14 |
Diane Trout | In trying to get scripts/srf to work I needed to set...
|
commit | commitdiff | tree |
| 2008-08-14 |
Diane Trout | refactor code to make a runfolder out of the UnitTest...
|
commit | commitdiff | tree |
| 2008-08-14 |
Diane Trout | we might as well automatically save the Summary.htm...
|
commit | commitdiff | tree |
| 2008-08-14 |
Diane Trout | Utility to create srf files from a bustard directory
|
commit | commitdiff | tree |
| 2008-08-11 |
Diane Trout | A bit of refactoring toward making the run progress...
|
commit | commitdiff | tree |
| 2008-07-16 |
Diane Trout | The older pipeline runs had a Phi-X control lane which...
|
commit | commitdiff | tree |
| 2008-07-15 |
Diane Trout | Provide cross referencing information to the libraries...
|
commit | commitdiff | tree |
| 2008-07-07 |
Diane Trout | Finish updating the Summary parsing file to handle...
|
commit | commitdiff | tree |
| 2008-07-03 |
Diane Trout | Partially handle the changed Summary.htm file from...
|
commit | commitdiff | tree |
| 2008-06-24 |
Diane Trout | Detect if our watch is on a mount point.
|
commit | commitdiff | tree |
| 2008-06-17 |
Diane Trout | Add QueueCommands, a class that allows controlling...
|
commit | commitdiff | tree |
| 2008-06-06 |
Diane Trout | don't use os.path.normpath when pathname is null in...
|
commit | commitdiff | tree |
| 2008-06-05 |
Diane Trout | add --extract-results to scripts/runfolder
|
commit | commitdiff | tree |
| 2008-05-29 |
Diane Trout | Some of the older flow cells used a default genome...
|
commit | commitdiff | tree |
| 2008-05-28 |
Diane Trout | Compute all the details needed to create our 25bp rerun...
|
commit | commitdiff | tree |
| 2008-05-27 |
Diane Trout | ignore more *.py[co~] files in some of our test directories
|
commit | commitdiff | tree |
| 2008-05-23 |
Diane Trout | add --run-xml to runfolder so you can generate summary...
|
commit | commitdiff | tree |
| 2008-05-23 |
Diane Trout | Update pipeline.gerald to handle eland_result files...
|
commit | commitdiff | tree |
| 2008-05-15 |
Diane Trout | add rerun_eland.py which extracts sub-sequences from...
|
commit | commitdiff | tree |
| 2008-05-14 |
Diane Trout | separate computing the sample/lane_id names from calculating...
|
commit | commitdiff | tree |
| 2008-05-13 |
Diane Trout | add additional debugging logging to retrieve_config...
|
commit | commitdiff | tree |
| 2008-05-13 |
Diane Trout | logging.basicConfig should only be in top level scripts.
|
commit | commitdiff | tree |
| 2008-05-10 |
Diane Trout | make it possible to include all alignments, not just...
|
commit | commitdiff | tree |
| 2008-05-10 |
Diane Trout | makebed is a script too
|
commit | commitdiff | tree |
| 2008-05-10 |
Diane Trout | Keep track of sample_name and lane_id computed from...
|
commit | commitdiff | tree |
| next |
projects / htsworkflow.git / search