use _ for field seperator in srf file names. (Using a uniform seperator
authorDiane Trout <diane@caltech.edu>
Thu, 25 Sep 2008 00:02:25 +0000 (00:02 +0000)
committerDiane Trout <diane@caltech.edu>
Thu, 25 Sep 2008 00:02:25 +0000 (00:02 +0000)
makes it easier to process the files later. Not to mention avoiding
characters that are "special" like : is a good idea for multi-platform
compatibility)

scripts/srf

index 240cc8e9d2636477752bf2352d3aaf8b4301618d..f8617eaf3dda492073c3c6cb42013a053afca54a 100644 (file)
@@ -24,7 +24,7 @@ def make_commands(run_name, lanes, site_name, destdir):
   cmd_list = []
   for lane in lanes:
     name_prefix = '%s_%%l_%%t_' % (run_name,)
-    destname = '%s:%s-%d.srf' % (site_name, run_name, lane)
+    destname = '%s_%s_%d.srf' % (site_name, run_name, lane)
     destdir = os.path.normpath(destdir)
     dest_path = os.path.join(destdir, destname)
     seq_pattern = 's_%d_*_seq.txt' % (lane,)