makes it easier to process the files later. Not to mention avoiding
characters that are "special" like : is a good idea for multi-platform
compatibility)
cmd_list = []
for lane in lanes:
name_prefix = '%s_%%l_%%t_' % (run_name,)
- destname = '%s:%s-%d.srf' % (site_name, run_name, lane)
+ destname = '%s_%s_%d.srf' % (site_name, run_name, lane)
destdir = os.path.normpath(destdir)
dest_path = os.path.join(destdir, destname)
seq_pattern = 's_%d_*_seq.txt' % (lane,)