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don't use os.path.normpath when pathname is null in PipelineRun
author
Diane Trout
<diane@caltech.edu>
Fri, 6 Jun 2008 21:02:36 +0000
(21:02 +0000)
committer
Diane Trout
<diane@caltech.edu>
Fri, 6 Jun 2008 21:02:36 +0000
(21:02 +0000)
gaworkflow/pipeline/runfolder.py
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diff --git
a/gaworkflow/pipeline/runfolder.py
b/gaworkflow/pipeline/runfolder.py
index 25d933110877ad3bfd853bfdf1e3456f020f90ee..3758679a97ca05956617d0c2aef0fee6611bd540 100644
(file)
--- a/
gaworkflow/pipeline/runfolder.py
+++ b/
gaworkflow/pipeline/runfolder.py
@@
-34,7
+34,10
@@
class PipelineRun(object):
FLOWCELL_ID = 'FlowcellID'
def __init__(self, pathname=None, firecrest=None, bustard=None, gerald=None, xml=None):
- self.pathname = os.path.normpath(pathname)
+ if pathname is not None:
+ self.pathname = os.path.normpath(pathname)
+ else:
+ self.pathname = None
self._name = None
self._flowcell_id = None
self.firecrest = firecrest