I started using ResultLane, so stop treating it like an abstract class.

I needed to initialize the ELAND class with something for the older
run xml files which don't have eland results initialized, So I initialized
some default values so the website wouldn't crash when accessing
these older files.

diff --git a/htsworkflow/pipelines/eland.py b/htsworkflow/pipelines/eland.py
index 2e0d9dce3a907f97974c13a7f3edf49b07b85bd8..5f3a345d3447ae84e95f292f9216f5802c9d669a 100644 (file)
--- a/htsworkflow/pipelines/eland.py
+++ b/htsworkflow/pipelines/eland.py
@@ -52,7 +52,7 @@ class ResultLane(object):
         """
         Actually read the file and actually count the reads
         """
-        raise NotImplementedError("Can't count abstract classes")
+        pass
 
     def _update_name(self):
         # extract the sample name