update imports for runfolder and eland_makebed for location in htswdataprod.

diff --git a/htswdataprod/scripts/eland_makebed b/htswdataprod/scripts/eland_makebed
index a4a414b27d57608d89cc5dca4b9b93f629c2fb62..a4572979edac2b6550f8493152352baaafca09b6 100755 (executable)
--- a/htswdataprod/scripts/eland_makebed
+++ b/htswdataprod/scripts/eland_makebed
@@ -3,7 +3,7 @@ import optparse
 import sys
 import os
 
-from gaworkflow.util.makebed import make_bed_from_eland_stream, make_bed_from_multi_eland_stream, make_description
+from htswdataprod.illumina.makebed import make_bed_from_eland_stream, make_bed_from_multi_eland_stream, make_description
 
 def make_parser():
   parser = optparse.OptionParser()

diff --git a/htswdataprod/scripts/runfolder b/htswdataprod/scripts/runfolder
index 2f76f4bbaaa36dd6233d8a52a38816661593ef38..252b9bc81fd1008dec1ed1d9e880d469259af76c 100644 (file)
--- a/htswdataprod/scripts/runfolder
+++ b/htswdataprod/scripts/runfolder
@@ -32,8 +32,8 @@ import optparse
 import sys
 import os
 
-from htswdataprod import runfolder
-from htswdataprod.runfolder import ElementTree
+from htswdataprod.illumina import runfolder
+from htswdataprod.illumina.runfolder import ElementTree
         
 def make_parser():
     usage = 'usage: %prog [options] runfolder_root_dir'