--- /dev/null
+First: LibrariesMakefile
+
+i) Set up sequence repository
+ii) Build binaries
+iii) Perl packages: XML::Simple, Statistics::Descriptive
+iv) Build reference data
+
+1) Set ROOT_DIR, DATA_DIR, and HTML_DIR in LibrariesMakefile
+
+Second: Projects/Tasks: ConfigureTasks.pm
+
+i) Build QuEST
+ii) NEED (TODO): Platform Version of BioProspector/genomebg
+iii) MACS installation
+iv) WingWong's Peak Caller (TODO: Need License)
+
+Parameters:
+my $root_dir = shift; (htswanalysis)
+my $data_dir = shift; (data repository base)
+my $parm = shift; ("all")
+
+Set url for getProjects in scripts/analys_track_comm.py
+
+.
+.
+. (this is where the felcat server crashed and burned)