projects
/
htsworkflow.git
/ commitdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
| commitdiff |
tree
raw
|
patch
| inline |
side by side
(parent:
cf175ff
)
Add in a few more genomes to detection code
author
Diane Trout
<diane@caltech.edu>
Thu, 19 Jul 2012 00:01:03 +0000
(17:01 -0700)
committer
Diane Trout
<diane@caltech.edu>
Thu, 19 Jul 2012 00:01:03 +0000
(17:01 -0700)
htsworkflow/pipelines/genomemap.py
patch
|
blob
|
history
diff --git
a/htsworkflow/pipelines/genomemap.py
b/htsworkflow/pipelines/genomemap.py
index f39df7914723afb4cf654c5d7c2c4ee63e6f8896..fe6254e34a269ebf8d529e3d0c08547c7ec7f276 100644
(file)
--- a/
htsworkflow/pipelines/genomemap.py
+++ b/
htsworkflow/pipelines/genomemap.py
@@
-78,8
+78,13
@@
def guess_genome(contig_sizes):
genomes = {'chr1': {197195432: 'mm9',
247249719: 'hg19',
+ 200994015: 'galGal3',
},
- 'chrI': {230218: 'sacCer3'},
+ 'chrI': {230218: 'sacCer3',
+ 15072421: 'elegans190'},
+ '1': {60348388: 'danRe6'},
+ 'chr2L': { 23011544: 'dm3' },
+
}
for key in genomes: