projects
/
htsworkflow.git
/ commitdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
| commitdiff |
tree
raw
|
patch
| inline |
side by side
(parent:
93559be
)
Don't need to duplicate %t tile in srf command
author
Diane Trout
<diane@caltech.edu>
Mon, 10 Oct 2011 23:56:07 +0000
(16:56 -0700)
committer
Diane Trout
<diane@caltech.edu>
Mon, 10 Oct 2011 23:56:07 +0000
(16:56 -0700)
htsworkflow/pipelines/srf.py
patch
|
blob
|
history
diff --git
a/htsworkflow/pipelines/srf.py
b/htsworkflow/pipelines/srf.py
index 41724bf27c0543b105e9174527733c9406e695d1..ef724f1dd36ec2a1b44739e1bfacff01a11e7de4 100644
(file)
--- a/
htsworkflow/pipelines/srf.py
+++ b/
htsworkflow/pipelines/srf.py
@@
-50,7
+50,7
@@
def make_srf_commands(run_name, bustard_dir, lanes, site_name, destdir, cmdlevel
cmd_list = []
for lane in lanes:
- name_prefix = '%s_%%l_
%%t_
' % (run_name,)
+ name_prefix = '%s_%%l_' % (run_name,)
destname = '%s_%s_%d.srf' % (site_name, run_name, lane)
destdir = os.path.normpath(destdir)
dest_path = os.path.join(destdir, destname)
@@
-174,3
+174,4
@@
def make_md5_commands(destdir):
cmd_list.append(cmd)
return cmd_list
+