+# -*- coding: utf-8 -*-
+from south.utils import datetime_utils as datetime
+from south.db import db
+from south.v2 import SchemaMigration
+from django.db import models
+
+
+class Migration(SchemaMigration):
+
+ def forwards(self, orm):
+ # Adding model 'FlowCellModel'
+ db.create_table(u'experiments_flowcellmodel', (
+ (u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
+ ('name', self.gf('django.db.models.fields.TextField')()),
+ ('fixed_time', self.gf('django.db.models.fields.IntegerField')(default=0)),
+ ('per_cycle_time', self.gf('django.db.models.fields.IntegerField')(default=0)),
+ ('isdefault', self.gf('django.db.models.fields.BooleanField')(default=False)),
+ ))
+ db.send_create_signal(u'experiments', ['FlowCellModel'])
+
+ # Adding field 'FlowCell.flowcell_model'
+ db.add_column(u'experiments_flowcell', 'flowcell_model',
+ self.gf('django.db.models.fields.related.ForeignKey')(default=1, to=orm['experiments.FlowCellModel']),
+ keep_default=False)
+
+
+ def backwards(self, orm):
+ # Deleting model 'FlowCellModel'
+ db.delete_table(u'experiments_flowcellmodel')
+
+ # Deleting field 'FlowCell.flowcell_model'
+ db.delete_column(u'experiments_flowcell', 'flowcell_model_id')
+
+
+ models = {
+ u'auth.group': {
+ 'Meta': {'object_name': 'Group'},
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '80'}),
+ 'permissions': ('django.db.models.fields.related.ManyToManyField', [], {'to': u"orm['auth.Permission']", 'symmetrical': 'False', 'blank': 'True'})
+ },
+ u'auth.permission': {
+ 'Meta': {'ordering': "(u'content_type__app_label', u'content_type__model', u'codename')", 'unique_together': "((u'content_type', u'codename'),)", 'object_name': 'Permission'},
+ 'codename': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
+ 'content_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['contenttypes.ContentType']"}),
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'name': ('django.db.models.fields.CharField', [], {'max_length': '50'})
+ },
+ u'auth.user': {
+ 'Meta': {'object_name': 'User'},
+ 'date_joined': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now'}),
+ 'email': ('django.db.models.fields.EmailField', [], {'max_length': '75', 'blank': 'True'}),
+ 'first_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}),
+ 'groups': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': "u'user_set'", 'blank': 'True', 'to': u"orm['auth.Group']"}),
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'is_active': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
+ 'is_staff': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+ 'is_superuser': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+ 'last_login': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now'}),
+ 'last_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}),
+ 'password': ('django.db.models.fields.CharField', [], {'max_length': '128'}),
+ 'user_permissions': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': "u'user_set'", 'blank': 'True', 'to': u"orm['auth.Permission']"}),
+ 'username': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '30'})
+ },
+ u'contenttypes.contenttype': {
+ 'Meta': {'ordering': "('name',)", 'unique_together': "(('app_label', 'model'),)", 'object_name': 'ContentType', 'db_table': "'django_content_type'"},
+ 'app_label': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'model': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
+ 'name': ('django.db.models.fields.CharField', [], {'max_length': '100'})
+ },
+ u'experiments.clusterstation': {
+ 'Meta': {'ordering': "['-isdefault', 'name']", 'object_name': 'ClusterStation'},
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'isdefault': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+ 'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '50'})
+ },
+ u'experiments.datafile': {
+ 'Meta': {'object_name': 'DataFile'},
+ 'data_run': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.DataRun']"}),
+ 'file_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.FileType']"}),
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'library': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Library']", 'null': 'True', 'blank': 'True'}),
+ 'random_key': ('django.db.models.fields.CharField', [], {'default': "'0bbbaa1c-82f1-11e3-82b3-f0def16fbea3'", 'max_length': '64', 'db_index': 'True'}),
+ 'relative_pathname': ('django.db.models.fields.CharField', [], {'max_length': '255', 'db_index': 'True'})
+ },
+ u'experiments.datarun': {
+ 'Meta': {'object_name': 'DataRun'},
+ 'alignment_software': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
+ 'alignment_version': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
+ 'basecall_software': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
+ 'basecall_version': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
+ 'comment': ('django.db.models.fields.TextField', [], {'blank': 'True'}),
+ 'cycle_start': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
+ 'cycle_stop': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
+ 'flowcell': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.FlowCell']"}),
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'image_software': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
+ 'image_version': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
+ 'last_update_time': ('django.db.models.fields.DateTimeField', [], {}),
+ 'result_dir': ('django.db.models.fields.CharField', [], {'max_length': '255'}),
+ 'run_start_time': ('django.db.models.fields.DateTimeField', [], {}),
+ 'run_status': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
+ 'runfolder_name': ('django.db.models.fields.CharField', [], {'max_length': '50'})
+ },
+ u'experiments.filetype': {
+ 'Meta': {'object_name': 'FileType'},
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'mimetype': ('django.db.models.fields.CharField', [], {'max_length': '50', 'null': 'True', 'blank': 'True'}),
+ 'name': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
+ 'regex': ('django.db.models.fields.CharField', [], {'max_length': '50', 'null': 'True', 'blank': 'True'})
+ },
+ u'experiments.flowcell': {
+ 'Meta': {'ordering': "['-run_date']", 'object_name': 'FlowCell'},
+ 'advanced_run': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+ 'cluster_station': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.ClusterStation']"}),
+ 'control_lane': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
+ 'flowcell_id': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '20', 'db_index': 'True'}),
+ 'flowcell_model': ('django.db.models.fields.related.ForeignKey', [], {'default': 'None', 'to': u"orm['experiments.FlowCellModel']"}),
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'}),
+ 'paired_end': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+ 'read_length': ('django.db.models.fields.IntegerField', [], {'default': '32'}),
+ 'run_date': ('django.db.models.fields.DateTimeField', [], {}),
+ 'sequencer': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.Sequencer']"})
+ },
+ u'experiments.flowcellmodel': {
+ 'Meta': {'object_name': 'FlowCellModel'},
+ 'fixed_time': ('django.db.models.fields.IntegerField', [], {'default': '0'}),
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'isdefault': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+ 'name': ('django.db.models.fields.TextField', [], {}),
+ 'per_cycle_time': ('django.db.models.fields.IntegerField', [], {'default': '0'})
+ },
+ u'experiments.lane': {
+ 'Meta': {'object_name': 'Lane'},
+ 'cluster_estimate': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
+ 'comment': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
+ 'flowcell': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.FlowCell']"}),
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'lane_number': ('django.db.models.fields.IntegerField', [], {}),
+ 'library': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Library']"}),
+ 'pM': ('django.db.models.fields.DecimalField', [], {'default': '5', 'max_digits': '5', 'decimal_places': '2'}),
+ 'status': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'})
+ },
+ u'experiments.sequencer': {
+ 'Meta': {'ordering': "['-isdefault', '-active', 'name']", 'object_name': 'Sequencer'},
+ 'active': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
+ 'comment': ('django.db.models.fields.CharField', [], {'max_length': '255'}),
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'instrument_name': ('django.db.models.fields.CharField', [], {'max_length': '50', 'db_index': 'True'}),
+ 'isdefault': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+ 'model': ('django.db.models.fields.CharField', [], {'max_length': '255'}),
+ 'name': ('django.db.models.fields.CharField', [], {'max_length': '50', 'db_index': 'True'}),
+ 'serial_number': ('django.db.models.fields.CharField', [], {'max_length': '50', 'db_index': 'True'})
+ },
+ u'samples.affiliation': {
+ 'Meta': {'ordering': "['name', 'contact']", 'unique_together': "(('name', 'contact'),)", 'object_name': 'Affiliation'},
+ 'contact': ('django.db.models.fields.CharField', [], {'max_length': '256', 'null': 'True', 'blank': 'True'}),
+ 'email': ('django.db.models.fields.EmailField', [], {'max_length': '75', 'null': 'True', 'blank': 'True'}),
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'}),
+ 'users': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'to': u"orm['samples.HTSUser']", 'null': 'True', 'blank': 'True'})
+ },
+ u'samples.antibody': {
+ 'Meta': {'ordering': "['antigene']", 'object_name': 'Antibody'},
+ 'antibodies': ('django.db.models.fields.CharField', [], {'max_length': '500', 'db_index': 'True'}),
+ 'antigene': ('django.db.models.fields.CharField', [], {'max_length': '500', 'db_index': 'True'}),
+ 'biology': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
+ 'catalog': ('django.db.models.fields.CharField', [], {'max_length': '50', 'null': 'True', 'blank': 'True'}),
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'nickname': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '20', 'null': 'True', 'blank': 'True'}),
+ 'notes': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
+ 'source': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '500', 'null': 'True', 'blank': 'True'})
+ },
+ u'samples.cellline': {
+ 'Meta': {'ordering': "['cellline_name']", 'object_name': 'Cellline'},
+ 'cellline_name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '100', 'db_index': 'True'}),
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'nickname': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '20', 'null': 'True', 'blank': 'True'}),
+ 'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'})
+ },
+ u'samples.condition': {
+ 'Meta': {'ordering': "['condition_name']", 'object_name': 'Condition'},
+ 'condition_name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '2000', 'db_index': 'True'}),
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'nickname': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '20', 'null': 'True', 'blank': 'True'}),
+ 'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'})
+ },
+ u'samples.experimenttype': {
+ 'Meta': {'object_name': 'ExperimentType'},
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '50'})
+ },
+ u'samples.htsuser': {
+ 'Meta': {'ordering': "['first_name', 'last_name', 'username']", 'object_name': 'HTSUser', '_ormbases': [u'auth.User']},
+ u'user_ptr': ('django.db.models.fields.related.OneToOneField', [], {'to': u"orm['auth.User']", 'unique': 'True', 'primary_key': 'True'})
+ },
+ u'samples.library': {
+ 'Meta': {'ordering': "['-id']", 'object_name': 'Library'},
+ 'account_number': ('django.db.models.fields.CharField', [], {'max_length': '100', 'null': 'True', 'blank': 'True'}),
+ 'affiliations': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': "'library_affiliations'", 'null': 'True', 'to': u"orm['samples.Affiliation']"}),
+ 'amplified_from_sample': ('django.db.models.fields.related.ForeignKey', [], {'blank': 'True', 'related_name': "'amplified_into_sample'", 'null': 'True', 'to': u"orm['samples.Library']"}),
+ 'antibody': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Antibody']", 'null': 'True', 'blank': 'True'}),
+ 'bioanalyzer_concentration': ('django.db.models.fields.DecimalField', [], {'null': 'True', 'max_digits': '5', 'decimal_places': '2', 'blank': 'True'}),
+ 'bioanalyzer_image_url': ('django.db.models.fields.URLField', [], {'default': "''", 'max_length': '200', 'blank': 'True'}),
+ 'bioanalyzer_summary': ('django.db.models.fields.TextField', [], {'default': "''", 'blank': 'True'}),
+ 'cell_line': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Cellline']", 'null': 'True', 'blank': 'True'}),
+ 'condition': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Condition']", 'null': 'True', 'blank': 'True'}),
+ 'creation_date': ('django.db.models.fields.DateField', [], {'null': 'True', 'blank': 'True'}),
+ 'experiment_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.ExperimentType']"}),
+ 'gel_cut_size': ('django.db.models.fields.IntegerField', [], {'default': '225', 'null': 'True', 'blank': 'True'}),
+ 'hidden': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+ 'id': ('django.db.models.fields.CharField', [], {'max_length': '10', 'primary_key': 'True'}),
+ 'insert_size': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
+ 'library_name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '100'}),
+ 'library_species': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Species']"}),
+ 'library_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.LibraryType']", 'null': 'True', 'blank': 'True'}),
+ 'made_by': ('django.db.models.fields.CharField', [], {'default': "'Lorian'", 'max_length': '50', 'blank': 'True'}),
+ 'made_for': ('django.db.models.fields.CharField', [], {'max_length': '50', 'blank': 'True'}),
+ 'multiplex_id': ('django.db.models.fields.CharField', [], {'max_length': '128', 'null': 'True', 'blank': 'True'}),
+ 'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'}),
+ 'replicate': ('django.db.models.fields.PositiveSmallIntegerField', [], {'null': 'True', 'blank': 'True'}),
+ 'stopping_point': ('django.db.models.fields.CharField', [], {'default': "'Done'", 'max_length': '25'}),
+ 'successful_pM': ('django.db.models.fields.DecimalField', [], {'null': 'True', 'max_digits': '9', 'decimal_places': '1', 'blank': 'True'}),
+ 'tags': ('django.db.models.fields.related.ManyToManyField', [], {'blank': 'True', 'related_name': "'library_tags'", 'null': 'True', 'symmetrical': 'False', 'to': u"orm['samples.Tag']"}),
+ 'ten_nM_dilution': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
+ 'undiluted_concentration': ('django.db.models.fields.DecimalField', [], {'null': 'True', 'max_digits': '5', 'decimal_places': '2', 'blank': 'True'})
+ },
+ u'samples.librarytype': {
+ 'Meta': {'ordering': "['-id']", 'object_name': 'LibraryType'},
+ 'can_multiplex': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'is_paired_end': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
+ 'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '255'})
+ },
+ u'samples.species': {
+ 'Meta': {'ordering': "['scientific_name']", 'object_name': 'Species'},
+ 'common_name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'blank': 'True'}),
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'scientific_name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'})
+ },
+ u'samples.tag': {
+ 'Meta': {'ordering': "['context', 'tag_name']", 'object_name': 'Tag'},
+ 'context': ('django.db.models.fields.CharField', [], {'default': "'Library'", 'max_length': '50'}),
+ u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
+ 'tag_name': ('django.db.models.fields.CharField', [], {'max_length': '100', 'db_index': 'True'})
+ }
+ }
+
+ complete_apps = ['experiments']