Update old dt-overrides.turtle example to use the newer library urls

diff --git a/extra/ucsc_encode_submission/dt-overrides.turtle b/extra/ucsc_encode_submission/dt-overrides.turtle
index 30f372c114954463e3fbc1fa950d0ea089e6aa25..888326c9f3e40306e934a12e21a129ee91d1ab30 100644 (file)
--- a/extra/ucsc_encode_submission/dt-overrides.turtle
+++ b/extra/ucsc_encode_submission/dt-overrides.turtle
@@ -9,55 +9,55 @@
 
 # woldlab-hepg2-rnaseq-2009dec
 <http://encodesubmit.ucsc.edu/pipeline/show/805>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879/> .
 
 # woldlab-hepg2-rnaseq-2009dec-part2
 <http://encodesubmit.ucsc.edu/pipeline/show/810>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879/> .
 
 # woldlab-hepg2-rnaseq-2009dec-part3\t 
 <http://encodesubmit.ucsc.edu/pipeline/show/869>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879/> .
 
 # woldlab-rnaseq-GM12878-rep1-stranded-2010Jan15
 <http://encodesubmit.ucsc.edu/pipeline/show/870>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11011> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11011/> .
 
 # woldlab-hepg2-rnaseq-2010Jan-part4
 <http://encodesubmit.ucsc.edu/pipeline/show/897>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879/> .
 
 # woldlab-gm12878-directional-rep2-rnaseq-2010Jan06
 <http://encodesubmit.ucsc.edu/pipeline/show/898>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010/> .
 
 # woldlab-K562-directional-rnaseq-rep1-2010Jan6
 <http://encodesubmit.ucsc.edu/pipeline/show/903>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010/> .
 
 # woldlab-K562-directional-rnaseq-rep2-2010jan9
 <http://encodesubmit.ucsc.edu/pipeline/show/904>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11007> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11007/> .
 
 # woldlab hESC 10886 rep1 2009Jan13
 <http://encodesubmit.ucsc.edu/pipeline/show/1026>
-  encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11286> .
+  encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11286/> .
 
 # woldlab 2010Jun15 1x75-Directional-NHEK-Rep1
 <http://encodesubmit.ucsc.edu/pipeline/show/1483>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11204> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11204/> .
 
 # woldlab Jun18 1x75-Directional-H1-hESC-Rep2
 <http://encodesubmit.ucsc.edu/pipeline/show/1626>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11009> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11009/> .
 
 # woldlab jun 18 1x75-Directional-GM12878-Rep1
 <http://encodesubmit.ucsc.edu/pipeline/show/1631>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11011> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11011/> .
 
 # woldlab jun 18  1x75-Directional-GM12878-Rep2
 <http://encodesubmit.ucsc.edu/pipeline/show/1632>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010/> .
 
 # woldlab jun 18 1x75-Directional-H1-hESC-Rep1
 <http://encodesubmit.ucsc.edu/pipeline/show/1633>
@@ -65,39 +65,39 @@
 
 # woldlab jun 18 1x75-Directional-HeLa-Rep1
 <http://encodesubmit.ucsc.edu/pipeline/show/1634>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11208> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11208/> .
 
 # woldlab jun 18 1x75-Directional-HeLa-Rep2
 <http://encodesubmit.ucsc.edu/pipeline/show/1635>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11207> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11207/> .
 
 # woldlab jun 18 1x75-Directional-HepG2-Rep1
 <http://encodesubmit.ucsc.edu/pipeline/show/1636>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11210> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11210/> .
 
 # woldlab jun 18 1x75-Directional-K562-Rep1
 <http://encodesubmit.ucsc.edu/pipeline/show/1637>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11008> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11008/> .
 
 # woldlab jun 18 1x75-Directional-HepG2-Rep2
 <http://encodesubmit.ucsc.edu/pipeline/show/1638>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11209> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11209/> .
 
 # woldlab jun 18 1x75-Directional-HUVEC-Rep1
 <http://encodesubmit.ucsc.edu/pipeline/show/1639>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11206> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11206/> .
 
 # woldlab jun 18 1x75-Directional-HUVEC-Rep2
 <http://encodesubmit.ucsc.edu/pipeline/show/1645>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11205> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11205/> .
 
 # woldlab jun 18 1x75-Directional-K562-Rep2
 <http://encodesubmit.ucsc.edu/pipeline/show/1646>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11007> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11007/> .
 
 # woldlab June  2x75-GM12878-Rep2
 <http://encodesubmit.ucsc.edu/pipeline/show/1856>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10515> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10515/> .
 
 #2010 jul 9corrected fastqs 
 <http://encodesubmit.ucsc.edu/pipeline/show/1874>
@@ -106,53 +106,52 @@
 
 # 2010-11-05 Correction 1x75-Directional-GM12878-Rep1.tgz
 <http://encodesubmit.ucsc.edu/pipeline/show/2926>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010/> .
 
 # 1x75-Directional-GM12878-Rep2
 <http://encodesubmit.ucsc.edu/pipeline/show/2930>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010/> .
 
 # 1x75-Directional-H1-hESC-Rep1
 <http://encodesubmit.ucsc.edu/pipeline/show/2931>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10947> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10947/> .
 
 # 1x75-Directional-H1-hESC-Rep2
 <http://encodesubmit.ucsc.edu/pipeline/show/2932>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11205> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11205/> .
 
 # 1x75-Directional-HUVEC-Rep1
 <http://encodesubmit.ucsc.edu/pipeline/show/2933>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11206> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11206/> .
 
 # 1x75-Directional-HUVEC-Rep2
 <http://encodesubmit.ucsc.edu/pipeline/show/2934>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11205> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11205/> .
 
 # 1x75-Directional-HeLa-Rep1
 <http://encodesubmit.ucsc.edu/pipeline/show/2935>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11208> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11208/> .
 
 # 1x75-Directional-HeLa-Rep2
 <http://encodesubmit.ucsc.edu/pipeline/show/2936>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11207> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11207/> .
 
 # 1x75-Directional-HepG2-Rep1
 <http://encodesubmit.ucsc.edu/pipeline/show/2937>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11210> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11210/> .
 
 # 1x75-Directional-HepG2-Rep2
 <http://encodesubmit.ucsc.edu/pipeline/show/2938>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11209> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11209/> .
 
 # 1x75-Directional-K562-Rep1
 <http://encodesubmit.ucsc.edu/pipeline/show/2939>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11008> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11008/> .
 
 # 1x75-Directional-K562-Rep2
 <http://encodesubmit.ucsc.edu/pipeline/show/2940>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11007> .
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11007/> .
 
 # 1x75-Directional-NHEK-Rep1
 <http://encodesubmit.ucsc.edu/pipeline/show/2941>
-    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11204> .
-
+    encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11204/> .