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some date cells contain two dates, which is treated as a string
[htsworkflow.git]
/
encode_submission
/
2016-06-24
Diane Trout
whitespace change
tree
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commitdiff
2016-06-24
Diane Trout
remove unused imports
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commitdiff
2016-04-11
Diane Trout
Initial implementation of importencoded
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commitdiff
2015-10-20
Diane Trout
Add mode to connect to the DCC and make sure the files...
tree
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commitdiff
2015-09-08
Diane Trout
convert from optparse to argparse
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commitdiff
2015-03-27
Diane Trout
Merge branch 'django1.7' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2015-03-27
Diane Trout
Switch encode3 submitter to use aws.
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commitdiff
2015-03-27
Diane Trout
Adjust logging overrides and move django.setup to after...
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commitdiff
2015-03-18
Diane Trout
import ConfigParser classes from six.moves.configparser
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commitdiff
2015-03-18
Diane Trout
use absolute_import
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commitdiff
2015-02-02
Diane Trout
take advantage of absolute_import to simplify import...
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commitdiff
2015-01-29
Diane Trout
use six.moves to work around urllib / urllib2 / urlpars...
tree
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commitdiff
2015-01-29
Diane Trout
remove unicode_literals from things going to redland RDF
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commitdiff
2015-01-29
Diane Trout
convert to print_function, and start adding unicode_lit...
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commitdiff
2015-01-29
Diane Trout
put #!/usr/bin/env python in the right place
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commitdiff
2015-01-29
Diane Trout
more use six.moves to import StringIO
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commitdiff
2015-01-29
Diane Trout
Convert old style except blocks to except Exception...
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commitdiff
2015-01-26
Diane Trout
remove unused code
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commitdiff
2014-10-29
Diane Trout
Merge branch 'django1.7' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2014-10-27
Diane Trout
Change the settings default to work with the two scoops...
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commitdiff
2014-07-26
Diane Trout
configure a mock keyring
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commitdiff
2014-07-25
Diane Trout
make whitespace pep8 complient
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commitdiff
2014-06-19
Diane Trout
Change unittest2 back into unittest.
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commitdiff
2014-06-10
Diane Trout
Directly generate compressed fastq files from HiSeq...
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commitdiff
2013-12-17
Diane Trout
Merge branch 'django1.4'
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commitdiff
2013-10-21
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-10-17
Diane Trout
Merge branch 'master' into django1.4
tree
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commitdiff
2013-10-17
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-10-08
Diane Trout
Add helpful logging information to explain missing...
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commitdiff
2013-07-22
Diane Trout
Generate manifest.txt files for submitting to ENCODE3.
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commitdiff
2013-07-08
Diane Trout
Update test to work with species -> species_name rename.
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commitdiff
2013-07-03
Diane Trout
Generate manifest files for ENCODE3
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commitdiff
2013-07-01
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-07-01
Diane Trout
Add the option to copy tree in addition to making a...
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commitdiff
2013-07-01
Diane Trout
Initial attempt to start generating trackHubs and manif...
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commitdiff
2013-06-28
Diane Trout
Add option to copy source files for a submission.
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commitdiff
2013-02-01
Diane Trout
Preliminary implementation of trackDb generation.
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commitdiff
2012-11-29
Diane Trout
Remove prints that were being called in test code.
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commitdiff
2012-11-28
Diane Trout
Convert to unittest2
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commitdiff
2012-11-28
Diane Trout
Convert to unittest2
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commitdiff
2012-11-20
Diane Trout
Fix RDF schema problems with lane_number and species.
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commitdiff
2012-11-14
Diane Trout
Add error message for typoing a result map filename.
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commitdiff
2012-09-25
Diane Trout
This might actually generate soft file with raw & suppl...
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commitdiff
2012-09-24
Diane Trout
Add a log message to for debugging
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commitdiff
2012-09-19
Diane Trout
Use htsworkflow ontology to validate various RDF using...
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commitdiff
2012-09-18
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
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commitdiff
2012-09-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-09-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-09-15
Diane Trout
Start implementing infering triples.
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commitdiff
2012-09-12
Diane Trout
Add a helpful error message when we need the submission...
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commitdiff
2012-09-10
Diane Trout
Use the same model for building fastqs as for building...
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commitdiff
2012-09-01
Diane Trout
Automatically add the flowcell subdirectory to the...
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commitdiff
2012-08-06
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-08-01
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-07-27
Diane Trout
Fix issues introduced when switching to the django...
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commitdiff
2012-06-22
Diane Trout
Add links to libraries and submission to data loaded...
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commitdiff
2012-06-21
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-06-14
Diane Trout
Slightly different sort order for finding libraries
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commitdiff
2012-05-31
Diane Trout
Fixup docstring to be clearer to others
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commitdiff
2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-05-23
Diane Trout
Generate html reports when doing sparql queries with...
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commitdiff
2012-05-12
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-05-12
Diane Trout
I found this version more useful for trying to
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commitdiff
2012-04-17
Diane Trout
Add ability to override location to tar and lftp commands
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commitdiff
2012-04-16
Diane Trout
Fix a typo and a missing .items() from the change of...
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commitdiff
2012-04-13
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-04-11
Diane Trout
Start developing GEO SOFT submission tool.
tree
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commitdiff
2012-04-11
Diane Trout
Move code out of ucsc_gather and into the htsworkflow...
tree
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commitdiff
2012-03-27
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-03-27
Diane Trout
Add an option to make a mini archive containing just...
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commitdiff
2012-03-26
Diane Trout
Remove a function from the inifile version of ucsc_gather
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commitdiff
2012-03-23
Diane Trout
Add a rdf type for ucsc track records
tree
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commitdiff
2012-03-08
Diane Trout
Change name of term used for conditions to condition_term
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commitdiff
2012-03-07
Diane Trout
Add extract HiSeq project based split fastq files to...
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commitdiff
2012-02-02
Diane Trout
Make report prettier.
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commitdiff
2012-01-31
Diane Trout
Shorten option for specifying model name.
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commitdiff
2012-01-30
Diane Trout
Fix a typo in some RDF example data
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commitdiff
2012-01-30
Diane Trout
Make it possible to filter which genome to run report...
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commitdiff
2012-01-30
Diane Trout
Add ability to refresh library data from our htsw server
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commitdiff
2012-01-25
Diane Trout
Start writing a report for "so, what experiments have...
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commitdiff
2012-01-25
Diane Trout
Added scanning for libraries that aren't attached to...
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commitdiff
2012-01-25
Diane Trout
Fix 'typo' in a library URN.
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commitdiff
2011-12-20
Diane Trout
Handle dateTime timestamps in RDF.Nodes
tree
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commitdiff
2011-12-20
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-12-20
Diane Trout
Move ucsc_encode_submission code out of extra so nose...
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commitdiff