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Rename headers to json_headers for requests (seemed a bit clearer)
[htsworkflow.git]
/
htsworkflow
/
2014-06-10
Diane Trout
Rename headers to json_headers for requests (seemed...
tree
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commitdiff
2014-06-10
Diane Trout
Updates to jsonld context for the DCC schemas.
tree
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commitdiff
2014-06-10
Diane Trout
Update test_encoded test cases due to https now being...
tree
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commitdiff
2014-06-10
Diane Trout
DCC switched to https
tree
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commitdiff
2014-06-10
Diane Trout
Update fastqname code & test code to better support...
tree
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commitdiff
2014-06-10
Diane Trout
Directly generate compressed fastq files from HiSeq...
tree
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commitdiff
2014-06-10
Diane Trout
the filename templates were moved from condorfastq...
tree
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commitdiff
2014-06-10
Diane Trout
Indicate when desplit_fastq didn't get any files to...
tree
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commitdiff
2014-06-10
Diane Trout
Make sure we can load a run file that lacks alignment...
tree
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commitdiff
2014-06-10
Diane Trout
For some reason the previous integrety fixes, added...
tree
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commitdiff
2014-06-10
Diane Trout
Postgresql has referential integrety checking.
tree
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commitdiff
2014-06-10
Diane Trout
Ignore the path when comparing filenames from the md5...
tree
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commitdiff
2014-06-10
Diane Trout
use autoopen to access fastq files
tree
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commitdiff
2014-06-10
Diane Trout
Start implementing tool to compute library fastq quality
tree
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commitdiff
2014-06-10
Diane Trout
Just use the python 2 url parsers instead of trying...
tree
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commitdiff
2014-06-10
Diane Trout
Update timestamps in inventory app test data to be...
tree
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commitdiff
2014-06-10
Diane Trout
point default flowcell directory to test data
tree
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commitdiff
2014-06-10
Diane Trout
add default values for some application specific values
tree
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commitdiff
2014-06-10
Diane Trout
Configure default STATICFILES_DIRS for static files...
tree
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commitdiff
2014-06-10
Diane Trout
Mathematica had a suggestion for a fastq mime type...
tree
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commitdiff
2014-06-10
Diane Trout
Regex pattern was wrong.
tree
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commitdiff
2014-06-10
Diane Trout
Convert more timestamps to include timezone
tree
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commitdiff
2014-06-10
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2014-02-18
Diane Trout
Add option to compress fastq file
tree
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commitdiff
2014-02-12
Diane Trout
Allow arbitrarily long regexes in experiment.FileType...
tree
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commitdiff
2014-01-22
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2014-01-22
Diane Trout
pass filters a string not an undefined variable
tree
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commitdiff
2014-01-17
Diane Trout
Remove django test environment setup code.
tree
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commitdiff
2014-01-17
Diane Trout
Convert timestamps from the runfolder file to a timezon...
tree
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commitdiff
2014-01-17
Diane Trout
django provides django.utils.timezone.now to return...
tree
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commitdiff
2014-01-17
Diane Trout
Set default timezone to where our lab is located
tree
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commitdiff
2014-01-17
Diane Trout
Update test data dates to have timezone information
tree
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commitdiff
2014-01-17
Diane Trout
Fix test to use newer django database dictionary instea...
tree
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commitdiff
2014-01-17
Diane Trout
Re-add default email addresses for email notification...
tree
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commitdiff
2014-01-17
Diane Trout
Implement a encoded search to json-ld wrapper.
tree
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commitdiff
2014-01-17
Diane Trout
make sure @vocab url has a trailing #. Its needed to...
tree
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commitdiff
2014-01-17
Diane Trout
Use new context creation functions to attach context...
tree
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commitdiff
2014-01-17
Diane Trout
Add functions to create a json-ld context and add names...
tree
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commitdiff
2014-01-15
Diane Trout
Utility class for accessing ENCODE3's submit / data...
tree
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commitdiff
2014-01-15
Diane Trout
Adapter to use PyLD's json-ld parser to add triples...
tree
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commitdiff
2014-01-15
Diane Trout
remove some trailing whitespace
tree
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commitdiff
2014-01-15
Diane Trout
remove some trailing whitespace
tree
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commitdiff
2014-01-15
Diane Trout
Add option to get_model to disable RDF graph context.
tree
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commitdiff
2014-01-08
Diane Trout
Rename stripNamespace strip_namespace
tree
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commitdiff
2013-12-23
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2013-12-23
Diane Trout
update settings for new location of WSGI_APPLICATION...
tree
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commitdiff
2013-12-23
Diane Trout
fix quote typos with the {% static %} template tag
tree
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commitdiff
2013-12-23
Diane Trout
Move wsgi into the actual project root.
tree
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commitdiff
2013-12-17
Diane Trout
remove some test code debugging print statements
tree
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commitdiff
2013-12-17
Diane Trout
Update WSGI_APPLICATION to point to the updated locatio...
tree
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commitdiff
2013-12-17
Diane Trout
Inventory works, even though its was hidden between...
tree
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commitdiff
2013-12-17
Diane Trout
move an example result directory into git and use it...
tree
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commitdiff
2013-12-17
Diane Trout
Merge branch 'django1.4'
tree
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commitdiff
2013-12-17
Diane Trout
Start simplyfing settings by using from settings_local...
tree
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commitdiff
2013-12-17
Diane Trout
add new wsgi.py driver
tree
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commitdiff
2013-12-17
Diane Trout
Update templates to consistently use {% static %} inste...
tree
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commitdiff
2013-12-17
Diane Trout
Move loading DTD into a function as the call caused...
tree
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commitdiff
2013-12-17
Diane Trout
move django imports around, change one function call...
tree
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commitdiff
2013-12-17
Diane Trout
Update exception caught for newer django?
tree
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commitdiff
2013-12-17
Diane Trout
use url function call for url definition instead of...
tree
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commitdiff
2013-12-17
Diane Trout
Move use of settings default into the function instead...
tree
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commitdiff
2013-12-10
Diane Trout
Being able to filter on paired end runs might be useful
tree
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commitdiff
2013-12-10
Diane Trout
remove deprecated module django.contrib.databrowse
tree
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commitdiff
2013-12-10
Diane Trout
With 1.6 boolean field changed to default Null, so...
tree
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commitdiff
2013-12-10
Diane Trout
Django 1.6 is pickier about enforcing referential integrity
tree
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commitdiff
2013-12-10
Diane Trout
Fix urls patterns import to be compatible with django 1.6
tree
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commitdiff
2013-12-10
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-12-10
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-12-09
Diane Trout
Add new paired library types to our hackish list for...
tree
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commitdiff
2013-12-06
Diane Trout
Attempt to be robust to not having an alignment in...
tree
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commitdiff
2013-12-06
Diane Trout
Attempt to be robust to not having an alignment in...
tree
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commitdiff
2013-12-06
Diane Trout
After implementing proper tests get a working implement...
tree
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commitdiff
2013-12-06
Diane Trout
After implementing proper tests get a working implement...
tree
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commitdiff
2013-12-05
Diane Trout
fix typo
tree
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commitdiff
2013-12-05
Diane Trout
fix typo
tree
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commitdiff
2013-12-05
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-12-05
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-12-05
Diane Trout
Recent IPAR xml config blocks include the runfolder...
tree
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commitdiff
2013-12-05
Diane Trout
Update for UCSC's validate manifest 1.7
tree
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commitdiff
2013-12-05
Diane Trout
Provide reporting of what command failed when bigWigInf...
tree
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commitdiff
2013-12-05
Diane Trout
Recent IPAR xml config blocks include the runfolder...
tree
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commitdiff
2013-12-05
Diane Trout
Add a way to report what url was failing
tree
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commitdiff
2013-12-02
Diane Trout
Catch and report another class of exception
tree
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commitdiff
2013-10-21
Diane Trout
Merge remote-tracking branch 'brisby/django1.4' into...
tree
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commitdiff
2013-10-21
Diane Trout
Pass additional information to the trackhub.
tree
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commitdiff
2013-10-21
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-10-17
Diane Trout
Merge branch 'master' into django1.4
tree
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commitdiff
2013-10-17
Diane Trout
Add command line feature to srf command
tree
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commitdiff
2013-10-17
Diane Trout
Dynamically respond to the number of lanes.
tree
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commitdiff
2013-10-17
Diane Trout
Fix typo.
tree
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commitdiff
2013-10-17
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-10-17
Diane Trout
Implement a wrapper around bigWigInfo to report bigWig...
tree
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commitdiff
2013-10-11
Diane Trout
Make it possible to set a label on a track.
tree
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commitdiff
2013-10-09
Diane Trout
add replaces / replace_reason generation to trackhub...
tree
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commitdiff
2013-10-09
Diane Trout
remove spurious newline
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commitdiff
2013-10-08
Diane Trout
Be more forgiving about the md5sum filename path
tree
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commitdiff
2013-09-24
Diane Trout
Share more code to generate result tree.
tree
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commitdiff
2013-08-12
Diane Trout
Update test data for renamed library type.
tree
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commitdiff
2013-08-10
Diane Trout
Add sortOrder and filtering parameters to the trackhub.
tree
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commitdiff
2013-07-22
Diane Trout
Move version finding code into the util directory.
tree
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commitdiff
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