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Convert old style except blocks to except Exception as variable: blocks
[htsworkflow.git]
/
htsworkflow
/
2015-01-29
Diane Trout
Convert old style except blocks to except Exception...
tree
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commitdiff
2015-01-28
Diane Trout
make the search tool more flexible
tree
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commitdiff
2015-01-21
Diane Trout
Update test_retrieve_config to work with factories
tree
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commitdiff
2015-01-14
Diane Trout
fix spelling error in module name
tree
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commitdiff
2015-01-13
Diane Trout
Don't pass null authentication information to ENCODED.
tree
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commitdiff
2015-01-13
Diane Trout
use absolute_import and print_function
tree
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commitdiff
2015-01-10
Diane Trout
get_schema_url only works on object types now, so chang...
tree
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commitdiff
2015-01-10
Diane Trout
at some point I added code that used base64, hashlib...
tree
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commitdiff
2014-12-13
Diane Trout
Merge branch 'django1.7' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2014-12-13
Diane Trout
Add document registration class.
tree
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commitdiff
2014-12-13
Diane Trout
add more type checking for parsing object type from...
tree
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commitdiff
2014-12-13
Diane Trout
add some helpful log messages
tree
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commitdiff
2014-12-01
Diane Trout
commit script to copy jumpgate sqlite database to felca...
tree
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commitdiff
2014-11-07
Diane Trout
Add some code to help read metadata out of spreadsheets.
tree
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commitdiff
2014-10-29
Diane Trout
Merge branch 'django1.7' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2014-10-27
Diane Trout
Change the settings default to work with the two scoops...
tree
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commitdiff
2014-10-23
Diane Trout
import os, so we can use os.path.join
tree
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commitdiff
2014-09-12
Diane Trout
make it easier to override variables in ENCODED class
tree
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commitdiff
2014-07-25
Diane Trout
Use two-scoop style multiple settings file.
tree
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commitdiff
2014-07-24
Diane Trout
DCC example code sets both content-type and accept...
tree
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commitdiff
2014-07-24
Diane Trout
pep8 whitespace cleanup.
tree
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commitdiff
2014-07-24
Diane Trout
Flatten project hierarchy, moving djano applications...
tree
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commitdiff
2014-06-23
Diane Trout
whitespace cleanup
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commitdiff
2014-06-23
Diane Trout
clean up for pep8 compliance.
tree
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commitdiff
2014-06-23
Diane Trout
code cleanup, remove commented out code and adjust...
tree
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commitdiff
2014-06-23
Diane Trout
Attempt to split common initial data from wold lab...
tree
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commitdiff
2014-06-23
Diane Trout
Remove very old misplaced initial data fixtures
tree
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commitdiff
2014-06-19
Diane Trout
Add fields list to a few ModelForms Meta class.
tree
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commitdiff
2014-06-19
Diane Trout
Rename get_query_set to get_queryset
tree
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commitdiff
2014-06-19
Diane Trout
Rename HttpResponse parameter mimetype to content_type
tree
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commitdiff
2014-06-19
Diane Trout
remove file created by typoing file name
tree
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commitdiff
2014-06-19
Diane Trout
Change unittest2 back into unittest.
tree
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commitdiff
2014-06-19
Diane Trout
Explicitly list initial_data.json for the test data...
tree
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commitdiff
2014-06-10
Diane Trout
Add post_json as some DCC objects are created with...
tree
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commitdiff
2014-06-10
Diane Trout
Rename headers to json_headers for requests (seemed...
tree
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commitdiff
2014-06-10
Diane Trout
Updates to jsonld context for the DCC schemas.
tree
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commitdiff
2014-06-10
Diane Trout
Update test_encoded test cases due to https now being...
tree
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commitdiff
2014-06-10
Diane Trout
DCC switched to https
tree
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commitdiff
2014-06-10
Diane Trout
Update fastqname code & test code to better support...
tree
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commitdiff
2014-06-10
Diane Trout
Directly generate compressed fastq files from HiSeq...
tree
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commitdiff
2014-06-10
Diane Trout
the filename templates were moved from condorfastq...
tree
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commitdiff
2014-06-10
Diane Trout
Indicate when desplit_fastq didn't get any files to...
tree
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commitdiff
2014-06-10
Diane Trout
Make sure we can load a run file that lacks alignment...
tree
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commitdiff
2014-06-10
Diane Trout
For some reason the previous integrety fixes, added...
tree
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commitdiff
2014-06-10
Diane Trout
Postgresql has referential integrety checking.
tree
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commitdiff
2014-06-10
Diane Trout
Ignore the path when comparing filenames from the md5...
tree
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commitdiff
2014-06-10
Diane Trout
use autoopen to access fastq files
tree
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commitdiff
2014-06-10
Diane Trout
Start implementing tool to compute library fastq quality
tree
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commitdiff
2014-06-10
Diane Trout
Just use the python 2 url parsers instead of trying...
tree
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commitdiff
2014-06-10
Diane Trout
Update timestamps in inventory app test data to be...
tree
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commitdiff
2014-06-10
Diane Trout
point default flowcell directory to test data
tree
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commitdiff
2014-06-10
Diane Trout
add default values for some application specific values
tree
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commitdiff
2014-06-10
Diane Trout
Configure default STATICFILES_DIRS for static files...
tree
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commitdiff
2014-06-10
Diane Trout
Mathematica had a suggestion for a fastq mime type...
tree
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commitdiff
2014-06-10
Diane Trout
Regex pattern was wrong.
tree
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commitdiff
2014-06-10
Diane Trout
Convert more timestamps to include timezone
tree
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commitdiff
2014-06-10
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2014-02-18
Diane Trout
Add option to compress fastq file
tree
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commitdiff
2014-02-12
Diane Trout
Allow arbitrarily long regexes in experiment.FileType...
tree
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commitdiff
2014-01-22
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2014-01-22
Diane Trout
pass filters a string not an undefined variable
tree
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commitdiff
2014-01-17
Diane Trout
Remove django test environment setup code.
tree
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commitdiff
2014-01-17
Diane Trout
Convert timestamps from the runfolder file to a timezon...
tree
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commitdiff
2014-01-17
Diane Trout
django provides django.utils.timezone.now to return...
tree
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commitdiff
2014-01-17
Diane Trout
Set default timezone to where our lab is located
tree
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commitdiff
2014-01-17
Diane Trout
Update test data dates to have timezone information
tree
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commitdiff
2014-01-17
Diane Trout
Fix test to use newer django database dictionary instea...
tree
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commitdiff
2014-01-17
Diane Trout
Re-add default email addresses for email notification...
tree
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commitdiff
2014-01-17
Diane Trout
Implement a encoded search to json-ld wrapper.
tree
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commitdiff
2014-01-17
Diane Trout
make sure @vocab url has a trailing #. Its needed to...
tree
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commitdiff
2014-01-17
Diane Trout
Use new context creation functions to attach context...
tree
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commitdiff
2014-01-17
Diane Trout
Add functions to create a json-ld context and add names...
tree
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commitdiff
2014-01-15
Diane Trout
Utility class for accessing ENCODE3's submit / data...
tree
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commitdiff
2014-01-15
Diane Trout
Adapter to use PyLD's json-ld parser to add triples...
tree
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commitdiff
2014-01-15
Diane Trout
remove some trailing whitespace
tree
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commitdiff
2014-01-15
Diane Trout
remove some trailing whitespace
tree
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commitdiff
2014-01-15
Diane Trout
Add option to get_model to disable RDF graph context.
tree
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commitdiff
2014-01-08
Diane Trout
Rename stripNamespace strip_namespace
tree
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commitdiff
2013-12-23
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2013-12-23
Diane Trout
update settings for new location of WSGI_APPLICATION...
tree
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commitdiff
2013-12-23
Diane Trout
fix quote typos with the {% static %} template tag
tree
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commitdiff
2013-12-23
Diane Trout
Move wsgi into the actual project root.
tree
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commitdiff
2013-12-17
Diane Trout
remove some test code debugging print statements
tree
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commitdiff
2013-12-17
Diane Trout
Update WSGI_APPLICATION to point to the updated locatio...
tree
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commitdiff
2013-12-17
Diane Trout
Inventory works, even though its was hidden between...
tree
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commitdiff
2013-12-17
Diane Trout
move an example result directory into git and use it...
tree
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commitdiff
2013-12-17
Diane Trout
Merge branch 'django1.4'
tree
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commitdiff
2013-12-17
Diane Trout
Start simplyfing settings by using from settings_local...
tree
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commitdiff
2013-12-17
Diane Trout
add new wsgi.py driver
tree
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commitdiff
2013-12-17
Diane Trout
Update templates to consistently use {% static %} inste...
tree
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commitdiff
2013-12-17
Diane Trout
Move loading DTD into a function as the call caused...
tree
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commitdiff
2013-12-17
Diane Trout
move django imports around, change one function call...
tree
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commitdiff
2013-12-17
Diane Trout
Update exception caught for newer django?
tree
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commitdiff
2013-12-17
Diane Trout
use url function call for url definition instead of...
tree
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commitdiff
2013-12-17
Diane Trout
Move use of settings default into the function instead...
tree
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commitdiff
2013-12-10
Diane Trout
Being able to filter on paired end runs might be useful
tree
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commitdiff
2013-12-10
Diane Trout
remove deprecated module django.contrib.databrowse
tree
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commitdiff
2013-12-10
Diane Trout
With 1.6 boolean field changed to default Null, so...
tree
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commitdiff
2013-12-10
Diane Trout
Django 1.6 is pickier about enforcing referential integrity
tree
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commitdiff
2013-12-10
Diane Trout
Fix urls patterns import to be compatible with django 1.6
tree
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commitdiff
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